Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4771 313 2e-80 seq3030 136 4e-27 seq2928 125 7e-24 seq4691 113 4e-20 seq4120 113 4e-20 seq4119 105 6e-18 >seq4771 Length=9300 Score = 313 bits (346), Expect = 2e-80 Identities = 1194/1843 (65%), Gaps = 50/1843 (3%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| ||||||||||| |||||||| ||| | ||| ||||| ||||| |||| Sbjct 4777 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGT 4718 Query 148013 CATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATGA 148071 || || ||||||| |||| | | || |||||||| |||||| || Sbjct 4717 CAGCTTACTGATAGTCGGGT-CGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATAT 4659 Query 148072 ACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTC 148130 | |||||||||||||| | || || | || || || | ||| |||||||| ||||| Sbjct 4658 AAGCGCCACGGTCAGCCGACAGGTCCA-GAACAGCCTTCTGCTTGATCTCCCACACCGTC 4600 Query 148131 TTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGC 148190 |||||| | ||| | || ||| |||||| | | || |||||||||||| | | Sbjct 4599 TTGTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCA 4540 Query 148191 GCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATC 148250 | ||||||||| || | ||| ||| | | | ||||||||| || || | ||| Sbjct 4539 TTCAGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 4480 Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 ||||||| || || | | ||||| || || | || || || |||| |||| | Sbjct 4479 AGATACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGAC 4420 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || | || || | |||||||||||||||| ||||| || || | || || |||||| Sbjct 4419 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 4360 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || |||||||||||||| || | |||| | || | | | || || || ||| Sbjct 4359 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTGATGACGTCATCTTTTAGTGCGGCC 4300 Query 148431 CAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGG 148487 |||| ||| ||| | || ||||| ||| |||||||||| |||| | || || Sbjct 4299 CAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTA 4240 Query 148488 CTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-T 148546 || || || ||||| | ||| ||| || || ||| || | || || | Sbjct 4239 CTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGA 4181 Query 148547 CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA--GCAGCGCCGCC 148604 || ||| | || | |||| ||||||||| || | | |||| | || || || Sbjct 4180 CGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCA-CG-AGCT 4123 Query 148605 GACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCC 148663 ||| ||| || || || || | | ||||| || || || ||||| ||||| Sbjct 4122 TGTGGGCTCTCGAAC-GCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4064 Query 148664 CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGATAGTGGT 148722 | |||||||| || || |||||||| ||| || |||| | | ||||| | || Sbjct 4063 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 4005 Query 148723 TGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTG-CGCA 148776 || |||||||| ||||| ||| |||||| | |||||| | || | | | | Sbjct 4004 TGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 3945 Query 148777 GCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGAT 148836 | || || | || || || || | ||| || || || | ||| || | | Sbjct 3944 TGTAGTCGAA--CACAC-CGTTTTCCAC-AAACATAGG--CAGCGCCACAGACGCCAAGT 3891 Query 148837 TGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGC 148896 ||||||| ||| |||||| || | ||||||| | || ||| ||| | |||||| Sbjct 3890 TGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGG 3831 Query 148897 ATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCA 148956 | |||| |||| ||||| || || ||||| ||| ||||||||||| |||| Sbjct 3830 AACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 3771 Query 148957 TGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCG 149013 || | || | || || || | ||| | || | || ||||| ||| | ||| | Sbjct 3770 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACC---ACAGCTGCTGAG 3714 Query 149014 CGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 || | | | | | || | || || |||| |||||| |||||| || ||| Sbjct 3713 CGTTGATTGTCTTACGCGCA-CGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAAC 3655 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | ||||| |||| |||| ||||| || | || || || | | |||| | Sbjct 3654 TCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 3595 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 || | || | ||| | |||||| || ||||| |||||||| |||||||| | | |||| Sbjct 3594 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 3535 Query 149193 C--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 | |||| ||||| || || ||| ||||| | || | ||| | || Sbjct 3534 CGGGCGCGGTGCAG--CTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGT 3477 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||||||||| | ||| | |||| || |||||||||||| |||||||||| Sbjct 3476 CGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGT 3417 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | || | ||| || ||| ||||||||| || | ||| || |||||| | | | || Sbjct 3416 CCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGC 3357 Query 149368 CGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427 |||| || || ||| ||| || || | ||||||| ||| ||||| | Sbjct 3356 CGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATAC 3297 Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 |||| | | || ||||| ||||| | || || ||| |||||||| || Sbjct 3296 CGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAG 3237 Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547 ||| || ||| | || || ||||| || ||| || ||| |||||||||| Sbjct 3236 AGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGTGCCGGCGT 3177 Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||| | || ||| ||||||| || || | ||||| ||| | |||||||| ||| | Sbjct 3176 TGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCA 3117 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 | || | ||||| |||||||||| || || |||| | ||| ||||||| Sbjct 3116 GTGCGGACTTGATGTCGCTCTTGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCG 3057 Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAGCCGTTTTCTAGTGTCTTGT 149724 | |||||| |||| || ||| | | | || ||||||| || || |||||| Sbjct 3056 GCCGCTCCACCAC---CTTACCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGA 3000 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||| ||||| | ||| || ||||||||| ||||| ||||| Sbjct 2999 AGCCGAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGC 2957 >seq3030 Length=90490 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || || ||| |||||||||||||||||| Sbjct 71600 GGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 71659 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| || |||||||| || || ||||| Sbjct 71660 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTT 71719 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||||||||||| |||| ||| ||||| || || || Sbjct 71720 GACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGT 71779 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 71780 CTTGACGAAAATCTGCAT 71797 >seq2928 Length=26498 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || ||||| || ||||| Sbjct 7311 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTT 7370 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 7371 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 7430 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| |||| || || || || ||||||||| Sbjct 7431 GGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCATG 7467 >seq4691 Length=143056 Score = 113 bits (124), Expect = 4e-20 Identities = 497/768 (65%), Gaps = 19/768 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| |||||||| || ||||| | | || || ||| ||| Sbjct 53778 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCAT 53719 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472 | || || ||||| | |||| || || | | || | | ||| |||||| | Sbjct 53718 CCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTA-GAGCAGAC 53660 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGC-GCGTTCATGCCCAGCAACGCC 120531 |||| || || ||||||||||||| ||||||| | || | |||||| || | || | || Sbjct 53659 GGTCAGCCACGAACTCAATGTACTGGCACATG-AGGGCAGAGTTCATACCAATCAGCTCC 53601 Query 120532 ACCGGCAACGCCG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || ||| | |||||| | |||||| |||| || || | || | Sbjct 53600 ACAGGGAGCGAGTCACGC-ACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTC 53542 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650 | | | | | | |||| |||| || || || | ||| | ||||| || || Sbjct 53541 GTGTACACGGCTCTCTGGCAGCTTG-GT--GACCAGCTTGGAGTACAAAAGGCAGGCGAA 53485 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||||||||||| ||||||||| || || |||||||| || |||| |||||||| Sbjct 53484 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 53425 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTC 120770 || ||| | |||| | | || |||| | || |||||| ||||| | ||| || Sbjct 53424 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 53365 Query 120771 CACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG-TCGATCCACT 120829 ||| || || || | || |||||| | | | | | || | ||| ||||| Sbjct 53364 CACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATA-CACGCGGGTCGCACCACT 53306 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCA 120889 | | ||||| | ||||| || || || || || ||| | || ||| || Sbjct 53305 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 53246 Query 120890 TGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGT 120949 ||| |||| | | ||| || | | |||||||| ||| | |||| || Sbjct 53245 GGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGT 53186 Query 120950 GCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGCA 121006 | | | ||| || || | |||| | || ||| | | ||||| || | ||| Sbjct 53185 GAATGTTCTCAATG-GCGAT--CTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCTGCA 53129 Query 121007 CCGCCC-GCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAG 121065 | | |||| | | | | ||| || |||||||||| ||| ||| |||||| Sbjct 53128 CTTCGTTGCTGAAGTTCATGGCCAAG-TTCTCGTTCACGATACCGTCACTGGCTGCGAAG 53070 Query 121066 AACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 || || |||||||||||||| ||||||||||||| ||||||||||||| Sbjct 53069 AAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTG 53022 >seq4120 Length=3454 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||| || ||||||||||||||||| |||||||||||||| | || | | Sbjct 2 CGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATC 61 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 | ||| | ||||||||||| | |||| || |||||||||| || || ||||||||| Sbjct 62 GAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATC 121 Query 133656 TGCAT 133660 ||||| Sbjct 122 TGCAT 126 >seq4119 Length=9781 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | || |||| |||||| ||||||||||| Sbjct 9660 GTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 9719 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 9720 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG 9779 Query 133584 A 133584 | Sbjct 9780 A 9780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483380168481760