Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3030 152 5e-32 seq4119 113 5e-20 seq2928 113 5e-20 seq4771 95.1 1e-14 >seq3030 Length=90490 Score = 152 bits (168), Expect = 5e-32 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||| || || | ||| Sbjct 71580 AGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGT--CCGACAGAGTGC 71637 Query 134556 G--AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| |||||||| ||||| || || |||| ||||||||| || ||||| || || | Sbjct 71638 GGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCT 71697 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGA 134672 | || || |||||||| || ||||| || ||||| |||| |||| ||||||||||| Sbjct 71698 CCTTGTCCTGAATTTTCTGCTTGACATTGT-CAATGCTGTCCGACGGCTCCACGTCGAGC 71756 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| || || || | || || |||||||| |||||||| Sbjct 71757 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 71800 >seq4119 Length=9781 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| || || || ||||| || ||||||||||| Sbjct 9627 TTTCCGCCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCA 9686 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||| Sbjct 9687 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGC 9746 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 || |||||||| || || || || ||||| ||||| Sbjct 9747 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGAC 9781 >seq2928 Length=26498 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 7277 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7336 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| || || || || || || ||||| || ||||| || Sbjct 7337 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7396 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||| |||| ||||||||||| || ||||| || || || || || || || Sbjct 7397 -CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7455 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 7456 AAGATCTGCAT 7466 >seq4771 Length=9300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 336/520 (65%), Gaps = 9/520 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | |||| || ||| | ||||| ||| ||||| | |||| || Sbjct 3059 CAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCACTG 3118 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| || |||||||| | || || | || | Sbjct 3119 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 3178 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| | || ||||| ||||| || || || | | | |||| || ||| Sbjct 3179 GCCGGCACGC-CACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTC 3237 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| |||| || | |||||| ||| || |||| | ||||| Sbjct 3238 TATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGG 3297 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||| | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 3298 TATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGG 3357 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| | ||||||||||| ||||| || || ||| || |||| || Sbjct 3358 CTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGA 3417 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||| ||| | || ||||| ||||||||||||||||| || Sbjct 3418 CCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGA 3477 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCG--CGC 8037 | | | || | || |||||||| ||| ||| || | ||| ||| ||| Sbjct 3478 CGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA--GCTGCACCGCGCCCGC 3535 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 || | || | || |||||||||| ||||| || |||| Sbjct 3536 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGA 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505355921264480