Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq4880 131 2e-25 >seq4880 Length=46859 Score = 131 bits (144), Expect = 2e-25 Identities = 277/411 (67%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || || || ||||| ||||| ||||||| ||||||||| | || | Sbjct 40930 TCTACCAAGCGTCTACAAGCGAGTTATATGGTAAAGTACAAGCCACACCACAGGATGAGA 40989 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 ||||| ||| | ||||| || || ||||| || || || | | || ||||||| || Sbjct 40990 ACACACCATTCCATCCACGTTCACCCTATGGGGTGGCAAAGCAATTTGCCTATTGGAGTG 41049 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 || ||| | | || |||||| ||| ||||| || || |||||||||||||| | Sbjct 41050 TAGTTAACCATCGCGAAGCTTATGGTATGTACGCCGTTAACGGGATTCTATTCAACCACG 41109 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 || || ||||| || ||||| || || ||||| || ||| | | | |||| Sbjct 41110 AGAGTCCTCGACGCGGACCAACTTTTGTCACGCGTAAAATCACTCGAGCCGTGGTGCGTA 41169 Query 161553 TTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGG 161612 || | ||| | || || || | |||| || || || | || || |||| Sbjct 41170 TTCACGCTGGAATCGAGAGCTGCCTGTTTATAGGCAACCTCGACGCCCAGCGCGACTGGG 41229 Query 161613 GTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATG 161672 | || ||| |||||| ||||| ||||||| ||| |||| || || ||||| || | Sbjct 41230 GCCACGCTCGAGACTACGTGGAATGTATGTGGCGAATGCTACAGCACGACACTCCCGAGG 41289 Query 161673 ACTATGTGATTGCCACAGGTAAAGAGT-ATTCAGTGAAGGACTTTGTAGAG 161722 | | ||| ||||||| || | || || || ||| || ||||||||| Sbjct 41290 ATTTCGTGGTTGCCACTGG-AGAGTGTCATAGTGTGCGTGAGTTTGTAGAG 41339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729868249417120