Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4691 111 5e-19 seq4771 98.7 3e-15 >seq4691 Length=143056 Score = 111 bits (122), Expect = 5e-19 Identities = 309/455 (68%), Gaps = 23/455 (5%) Strand=Plus/Plus Query 443433 GCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCT---AC 443489 |||||||| ||| | || ||||||||||| ||||| ||| | | ||| || Sbjct 53065 GCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAAC 53124 Query 443490 GAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAAC 443549 ||| || ||| ||||||| || | |||||| | ||||| ||| || |||||| Sbjct 53125 GAAGTGCAGGTGC---CCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAAC 53181 Query 443550 ATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAAC 443607 |||||| | ||||||||| ||| | | ||| ||||| || || || || | ||| | Sbjct 53182 ATTCACTCGGAGGTCTAC--TCACT-GCTCATTGACACGTACATC--AAGGACG-CGATC 53235 Query 443608 -AGC-GGTCCATCTTCT-CAT--CGTTCATGACCACGCCAGGCATCACTGAAAAGACTCG 443662 || || |||||| || | | | || | ||||| || | |||| | ||| ||| Sbjct 53236 GAGAAGGACCATCTCCTGCGTGCCATTGA-GACCATCCCTTGTGTCACGAAGAAGGCTCA 53294 Query 443663 CTGGGCAAAACAGTGGCTCGAAC-GAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTT 443721 ||||||| ||||| ||| | | | ||| | || | ||||| || | |||| Sbjct 53295 CTGGGCACTCAAGTGGTGCGACCCGCGTGTATC-CTCCTACCCGGAGCGCCTGCTGGCTT 53353 Query 443722 TTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAA 443781 | |||| || ||||| | || || ||| |||| ||||||||| ||| | || Sbjct 53354 TCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT-CTTTCTGCTCCATCTTTTGGCTAAAG 53412 Query 443782 AAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGT 443841 ||||| || || |||| |||||||| ||| ||||| || |||||||| |||||||| Sbjct 53413 AAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGC 53472 Query 443842 TTGCATTGCGACTTCGCCTGTCTTCTCTACACCAA 443876 |||| ||||||||||| ||| | ||| |||| Sbjct 53473 ATGCACACGGACTTCGCCTGCCTTTTGTACTCCAA 53507 >seq4771 Length=9300 Score = 98.7 bits (108), Expect = 3e-15 Identities = 353/539 (65%), Gaps = 10/539 (2%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| || ||| | |||||||| ||| || ||||||||| || || || || || Sbjct 3367 CGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGG 3426 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 || || ||| || ||||| | |||||| |||||||||||||||||||| || || Sbjct 3427 AGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGAC-GTGTTCG 3485 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACAT-CTAC 255148 ||| | ||| | || ||| | ||| || |||||||||| | | Sbjct 3486 AGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTT 3545 Query 255149 AC-CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAG 255207 || |||||| ||||| ||||| || ||| | ||||| | | | ||||| Sbjct 3546 ACGCGCTGT-GGGTGC-CTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAG 3603 Query 255208 CCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAA 255267 | | ||||||||| | | || ||||| ||| | ||||| || ||||||||| Sbjct 3604 TTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGC 3663 Query 255268 ACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGA 255326 |||||| |||||||| | || || | |||| | ||| | ||| || || Sbjct 3664 TCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAA-TCAACGCTCAGCAGC 3722 Query 255327 TCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAG 255386 | ||| | | || | | ||| | || || ||| |||| ||| | | |||| | Sbjct 3723 TGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTACAAGG 3782 Query 255387 AC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTG 255445 || || ||| |||| ||||||||| | || |||||||| || | ||| | Sbjct 3783 ACGCAGCTAACCGCA-AGTCGAACCAGCAGAACTTGGGTACGATCCGTTCCAGCAACTTA 3841 Query 255446 TGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 ||| ||| | | | | |||||||| | | |||||||| || |||||||||||||| Sbjct 3842 TGCTGCGAAGTCATGGAGTACACGTCACCCGATGAGGTGGCAGTGTGCAACTTGGCGTC 3900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588199162868180