Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4771 242 5e-59 seq4691 167 3e-36 seq2914 95.1 1e-14 >seq4771 Length=9300 Score = 242 bits (268), Expect = 5e-59 Identities = 1089/1692 (64%), Gaps = 74/1692 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 4771 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 4712 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 117955 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 4711 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 4657 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || || |||| || || | ||| ||||| |||||| |||||||| ||| | Sbjct 4656 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 4598 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| | ||||| |||||| || || ||| || || || | || ||||| | || Sbjct 4597 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 4538 Query 118076 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 4537 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 4480 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 4479 AGATACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGAC 4420 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 4419 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 4360 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGAGCG 118310 ||||| | || || |||||||||||| | || | ||| ||| || || || ||| Sbjct 4359 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TGATGACGTCATCTTTTAGTGCG 4303 Query 118311 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 4302 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 4248 Query 118363 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 118420 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 4247 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 4191 Query 118421 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | | | || ||| | ||| || || || || || || ||| |||| | Sbjct 4190 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 4131 Query 118480 CCTTGGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGAC 118536 | || | || || || |||||| ||| || | || || ||||||| |||| Sbjct 4130 CACGAGCTT-GTGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGAC 4074 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CG 118595 | ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | Sbjct 4073 CCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACA 4015 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 |||||| | || ||||| ||| | || || || |||| ||||| | ||| Sbjct 4014 GGATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCA 3955 Query 118656 TGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 | || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 3954 TACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCAC 3902 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 ||||||| || ||||| | |||||| |||||||| || | ||| ||| Sbjct 3901 AGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCA 3842 Query 118775 CAAGTTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 118831 ||||| |||| || || |||||||||| || || ||||| |||| || Sbjct 3841 TAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGC 3785 Query 118832 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 3784 GTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA 3725 Query 118892 GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAG 118949 || | || | | | || | | || | | || || | |||||||||| || Sbjct 3724 --CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 3667 Query 118950 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 119009 || ||||||||||| || ||| | ||| | || || || || | | || ||||| Sbjct 3666 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 3607 Query 119010 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 | | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 3606 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 3547 Query 119070 GAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 3546 TAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAA 3488 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 3487 CTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACC 3428 Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 || |||||| ||||| | || ||| ||||||| ||||| | ||| || || || || Sbjct 3427 TCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCC 3368 Query 119246 ATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305 | || ||| || || || || || ||| |||| | || | ||| || Sbjct 3367 GTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACT 3308 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 3307 GATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAAT 3248 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 || || || |||||| ||| | || | |||||||| |||| ||||| | || Sbjct 3247 GCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGG 3188 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGT 119484 || || |||||||||||||| || || ||||| |||| | || | || ||||| | Sbjct 3187 CGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCT 3129 Query 119485 CGTAGGTCTCCA 119496 |||| ||||||| Sbjct 3128 CGTACGTCTCCA 3117 >seq4691 Length=143056 Score = 167 bits (184), Expect = 3e-36 Identities = 393/581 (68%), Gaps = 18/581 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 53777 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 53718 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | || | || | ||| |||| | | ||| ||||| Sbjct 53717 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 53658 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | ||||||||||| || || | ||| Sbjct 53657 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 53598 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | ||| | | |||||| ||||||| || || | ||| |||| Sbjct 53597 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 53539 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-----GGCAAA 130020 | | ||| || ||| | | | | || |||| |||| | | ||| || Sbjct 53538 TACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGCAGGCGAA 53485 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 ||| ||| | ||||||||||| |||||| || |||||||||| |||||| ||||| Sbjct 53484 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 53425 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | ||| || || | || || ||||| ||||||||||| || || Sbjct 53424 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 53365 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACT 130199 |||| ||||| || | || ||||| | ||||| | || | || |||||| Sbjct 53364 CACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACT 53306 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 130259 | | ||||| || ||||| ||| || ||| |||| ||||| || || | ||| | Sbjct 53305 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 53246 Query 130260 CCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 | ||| || ||| | || ||||||||| | || ||||| Sbjct 53245 GGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 53206 >seq2914 Length=83898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 19158 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 19217 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 180046 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 19218 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 19269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618383220521440