Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4771 230 3e-55 seq4691 111 2e-19 seq2914 104 3e-17 seq1651 100 3e-16 >seq4771 Length=9300 Score = 230 bits (254), Expect = 3e-55 Identities = 1082/1681 (64%), Gaps = 52/1681 (3%) Strand=Plus/Plus Query 104283 TGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||||| ||||| || | || | |||| ||||| || || || |||||| Sbjct 3117 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 3175 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || ||| | || || |||| ||||||||| | || | |||| ||| Sbjct 3176 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGAC 3235 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || || || | || || | | | || || ||||| || ||||| || Sbjct 3236 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 3295 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 104520 ||||| || || || || | | | |||| ||| | || || || || || || Sbjct 3296 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGAA 3354 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || ||||| || ||| | || || ||||||| ||| || |||||||| Sbjct 3355 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 3414 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 | || | || || || ||||| || |||| |||| | ||||| |||||||| Sbjct 3415 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 3474 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 || | | |||||||| || ||||| ||||| ||| | ||| | || ||| Sbjct 3475 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 3534 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||| | || | ||| || ||| | || |||||||||||||||||||| |||| | ||| Sbjct 3535 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGG 3594 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGG 104816 ||| ||| | | || ||||| || | || |||||||| | ||| ||| | ||| || | Sbjct 3595 CAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATG 3653 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 |||||||||| || || |||||||||| | ||||| || ||| | ||| | | Sbjct 3654 AGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACG 3713 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 3714 CTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGC 3773 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | ||||| ||||| ||||| ||| || || |||| |||||| |||| ||| Sbjct 3774 TCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC---CGTT 3830 Query 104997 C---CAATCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGT 105052 | ||| | || ||| || |||| | || | || |||||| ||| ||||| Sbjct 3831 CCAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGC 3889 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||| | || || | || || || | || |||||| | || | || || || Sbjct 3890 AACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTAC 3943 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | | ||| | || || || |||| ||||| |||| || || || Sbjct 3944 AAGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTTAACAAGGTCATCGACGTC 4003 Query 105173 AATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 || | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 4004 AACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTAT 4062 Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA-TTCCGACG 105290 || || |||||||| ||||||| ||||| || | |||| || || || || Sbjct 4063 TGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCAC- 4121 Query 105291 AAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGA 105350 |||| ||| | || | ||| || ||||| || || || || | ||| || Sbjct 4122 AAGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGT 4181 Query 105351 GTTCAGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 ||| ||| || | ||| ||||| || || || || |||| ||||| || | Sbjct 4182 CGATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--C 4237 Query 105409 A-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--A 105462 | ||||| ||| || || || ||||||| || | ||| | || || | | Sbjct 4238 AGTAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAA 4296 Query 105463 CTGGGAAGCTCTCAAGGA--ACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 ||||| || || || || ||| ||||| | | ||||| |||||| || || | Sbjct 4297 CTGGGCCGCACTAAAAGATGACGTCATCA---AACACGGTCTCCGTAACTCGCTGCTGGT 4353 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || || ||||| ||||||||||| || || ||| |||| || || || | | || || Sbjct 4354 TGCACCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCC 4413 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639 |||||| | ||||| || | | | || || ||||| ||| || ||||| Sbjct 4414 TTACACGTCCAACATGTACAACCGTCGTGTTTTGGCTGGTGAGTTCACGATCGTTAACAA 4473 Query 105640 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTC 105697 | |||| || | || || | ||| | || | ||| | ||| || | | ||| Sbjct 4474 GTATCTGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAG 4531 Query 105698 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757 || |||| | ||||| || | || || | ||| ||||| |||| ||||| || Sbjct 4532 ATTCTGAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAG 4591 Query 105758 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 105817 |||| || || ||||| |||||| ||||| ||| | ||| || | || || ||| Sbjct 4592 AAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGT 4651 Query 105818 GGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTC 105876 || ||||| || || ||||| |||| || ||| | || || || Sbjct 4652 GG-CGCTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAG 4710 Query 105877 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 105936 ||||| | || |||||| | ||| |||||||||||| ||||| || || ||||| || Sbjct 4711 TAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTA 4770 Query 105937 C 105937 | Sbjct 4771 C 4771 >seq4691 Length=143056 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 53338 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 53397 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 53398 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 53457 Query 94924 TCTCGTGACGAGGG 94937 |||||||||||| Sbjct 53458 AGTCGTGACGAGGG 53471 >seq2914 Length=83898 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 ||||||| ||| | |||||| || ||||| | || ||||| ||||||||||||||| Sbjct 19143 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 19202 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || || || || |||||||||| || || || ||||| |||| |||||| || |||||| Sbjct 19203 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 19262 Query 169433 TCGGT 169437 || || Sbjct 19263 TCCGT 19267 >seq1651 Length=31538 Score = 100 bits (110), Expect = 3e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 25372 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 25429 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 25430 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 25489 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 25490 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 25549 Query 9882 TACCTGGC 9889 |||| ||| Sbjct 25550 TACCAGGC 25557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583211776929760