Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5134 158 4e-33 seq722 120 9e-22 seq3030 116 1e-20 >seq5134 Length=18240 Score = 158 bits (174), Expect = 4e-33 Identities = 941/1485 (63%), Gaps = 44/1485 (3%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || ||||| || ||||| | || ||||| || || || || || Sbjct 11724 GGCATTGATCTGGGCACGACTTACTCGTGTGTGGGCGTGTGGCAGAACGACCGCGTGGAG 11783 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || || ||| | || || || || ||||| || || ||||| || Sbjct 11784 ATCATCGCCAACGACCAGGGCAACCGCACGACCCCGTCGTACGTGGCGTTCACCGACACG 11843 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || || ||| |||| || || || | ||| || || | || ||||| Sbjct 11844 GAGCGTCTTATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACGCACACAACACGGTG 11903 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA----CAATCTG 349439 ||||||| ||||| | || || | ||||| || ||| | | || || | Sbjct 11904 TTTGATGTCAAGCGGTTGATCGGGCGCAAGTTC-----ACCGATCCAGAAGTGCAGTCGG 11958 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 | | || || | || || | || |||| | | | ||||| | | || Sbjct 11959 ACATCAAGCACTGGCCGTTCAAGGTAGTTCGTGGTGCTGAGAACAAACCTCAACTGGTGG 12018 Query 349500 TTGAATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | | | || || || | || || || ||| || || ||||| || ||||| || Sbjct 12019 TGCAGTTCAAGGGCGAGTCGAAGACG-TTCCAACCGGAGGAGATTTCGTCTATGGTGTTG 12077 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACA-GTAACTGATGCTGTTAT 349617 | || ||| || | || || |||| | || ||||| || | | || || | Sbjct 12078 ATCAAGATGCGAGAGGTGGCCGAGGCATTCATTGGC-AAACATGTGAAGAACGCGGTGGT 12136 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC-A 349676 || || || ||||| || || || | ||||| || || |||||||| || ||| | Sbjct 12137 GACGGTCCCGGCCTACTTCAACGACTCGCAGCGCCAAGCGACTAAAGATGCGGG-AGCTA 12195 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || || ||||| || | || || || || || || || || || || || |||| Sbjct 12196 TTGCTGGTTTGAATGTGCTGCGTATCATCAACGAGCCGACGGCCGCTGCGATCGCCTATG 12255 Query 349737 GGCTTGATAA--AATGAG-TGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 |||| || || || ||| ||| || || | || || || ||| | || || | Sbjct 12256 GGCTGGACAAGAAAGGAGGTGAGCAC------AACGTGCTGATCTTCGATCTCGGCGGCG 12309 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 | || || ||||| || || || || ||||||| || || || || || || || || | Sbjct 12310 GAACGTTCGATGTCTCTCTGCTCACTATTGAAGAAGGCATCTTCGAGGTCAAGGCGACAG 12369 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 | ||||| || || | || || || || || || || ||||| || |||| || Sbjct 12370 CGGGTGACACGCACTTGGGAGGTGAGGACTTCGACAACCGTCTGGTCGAATATTTCGTAC 12429 Query 349914 AAGAATTTAAGCGTCAAGCTAAA--ATTGATATTGGAGATAATCCTAGAGCAATGCGTCG 349971 | ||||| ||||| |||| || | ||||| || || | | || ||||||| Sbjct 12430 AGGAATTCAAGCG-CAAG-TACCGCAAGGATATGACAGTGAACCAGCGTGCGCTGCGTCG 12487 Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTAT 350031 ||| | || ||||| ||||| || ||||| | || || || | | || | | | Sbjct 12488 CCTGCGTACGGCGTGCGAACGCGCCAAGCGGACGTTGTCTACTTCGGCGCAGGCGTACCT 12547 Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 ||| ||||| || || ||||| | |||||| || | || || ||||| ||||| Sbjct 12548 TGAGATTGACTCGCTACTGGATGGTATCGATTTCAACTCGACCATCACGCGTGCGCGGTT 12607 Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTA 350149 |||||| | || | || || ||| ||| || ||||| || || | | || || Sbjct 12608 TGAAGATCTGTGCAGCGA-CTATTT-CCGCAAGACGATGGAGCCGGTCGCGCAGGTTTTG 12665 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 || |||| ||||||| || ||| | || || | || | || || || || || Sbjct 12666 CGTGACTCAAAGCTGTCCAAGAACCAGGTGGACGAGATCGTCCTGGTCGGCGGATCGACG 12725 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT-TTTAATGGCAAAGAAC-CTTCTA 350267 || || || || || || || || || || |||| || || ||||| || | ||| | Sbjct 12726 CGCATCCCGAAGGTGCAGCAATTGCT-GATGGGTTTCTTCAACGGCAAGGATCTGTTCAA 12784 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTAT 350327 | || || || || || ||||| || || || || || | || ||||| | || | Sbjct 12785 G-TCGATCAACCCGGACGAAGCCGTCGCGTACGGCGCCACGGTGCAGGCGGCGATACTGA 12843 Query 350328 CTGGAAATAAGAGT-----TCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACT 350382 ||| ||| |||| || || | | || || |||| || || || | || | Sbjct 12844 GTGGCAAT--GAGTCATCGTCCAAGCTGCAAGACCTGCTACTGCTGGACGTCGCACCGTT 12901 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 ||| | || || || || | |||| ||| ||||| || ||||| | || | ||| Sbjct 12902 GTCGTTGGGTTTGGAGACGGCCGGTGGAGTTATGACCAAGCTCATTCCACGCAACACTAC 12961 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC 350502 || ||| | || ||| | || || || || || | | ||||| ||||| | || Sbjct 12962 GGTGCCTGCGAAGAAGACGCAGACGTTCTCGACGTACACTGATAACCAGCCGGGCGTGCT 13021 Query 350503 AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATT 350562 || ||||| || || || ||||| | || ||||| || || || | || Sbjct 13022 GATCCAAGTGTTCGAGGGCGAACGAACCATGACGCGTGATAACCATCTTCTGGGCAAGTT 13081 Query 350563 TACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGA 350622 | ||| | || || || ||||| | || || ||||||||||| || | ||||| Sbjct 13082 CAACCTGGACGGTATCCCGCCCATGCCGCGCGGTGTGCCTCAGATTGACGTGACGTTCGA 13141 Query 350623 TATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 ||||| || || ||||| || || | || || || || || Sbjct 13142 CGTTGATGTCAACGGCATTTTGAACGTCTCGGCCGTGGAGAAGTC 13186 >seq722 Length=2650 Score = 120 bits (132), Expect = 9e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 130719 TCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCT 130778 |||||||| |||| | ||| || |||||||| ||||| || ||||| || || || || Sbjct 713 TCATCATGACCAGCAAGCATCCCACCAAGCATGACAAAGTCTGCTCCAGCCCCGAACGCC 772 Query 130779 TTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCA 130838 || |||| || || ||| || | || || || |||| || || || || || | || Sbjct 773 TTAGCAACGTCACCAGGACATGTGCAGCCTCCGTCAGAGATCACGTGGCCGTTGAGACCG 832 Query 130839 TGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACT 130898 || || |||||||||||||| | |||||| | || ||||| || ||||||||| | Sbjct 833 TGAGCGGCATCAGCACACTCCAGCACAGCAGACAACTGCGGATAACCCACTCCAGTTTGT 892 Query 130899 TTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCC 130954 || | || || || |||| |||||||| || || | || | || || ||||| Sbjct 893 TTACGAGTGGTGCACACAGAGCCTGGACCGATGCCGACCTTGATGATGTCGGCTCC 948 >seq3030 Length=90490 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || || Sbjct 71570 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 71629 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 71630 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 71689 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 71690 GATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 71749 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| || || || || || || |||||||||||| Sbjct 71750 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 71798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515123858939372