Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4771 246 3e-60 seq2914 118 1e-21 seq6281 100 3e-16 seq4880 95.1 1e-14 >seq4771 Length=9300 Score = 246 bits (272), Expect = 3e-60 Identities = 341/472 (72%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| || |||| ||| ||||||||||| || || || |||||| Sbjct 3119 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 3178 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| |||||||| |||| ||| |||||||||| Sbjct 3179 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTCT 3238 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| || || ||| | || ||| ||||| || ||| |||| ||| Sbjct 3239 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 3298 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGA---ACGGCACACCAATCAAGGGGACGAA 53478 ||||||||| ||| | ||| |||| || | || || || ||| || ||||| Sbjct 3299 ATCGGTATCAGTATGCAC-AACATCCGCGCCACTAACAGCT-AC--ATCCGCGGCACGAA 3354 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || || | || ||| | || || || ||| ||||||| || || || Sbjct 3355 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 3414 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 ||||||| || || ||||||||||| |||||||| |||||| | |||||||||||||| Sbjct 3415 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 3474 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | ||||| || || |||||| ||| || ||| | || | ||| ||| Sbjct 3475 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 3534 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || |||||| | || || ||||||||| | | |||||| Sbjct 3535 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAG 3586 Score = 167 bits (184), Expect = 3e-36 Identities = 529/810 (65%), Gaps = 29/810 (4%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||| |||||||||| || || || || || || ||| |||||| Sbjct 3974 ACGCGCAACCTTAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG 4033 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || || || ||||| | || || || ||||| |||| || ||||| Sbjct 4034 TCCAACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATC 4093 Query 55253 ATGCTCGGATTGCCC-TTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-A 55310 | | | | | | | ||||| || ||||| ||| | ||| || |||||||| | Sbjct 4094 CTCAT-GAACTACGCGTTCGAGAGCCCACAAGCTCGTGAATTGAACAAGAACATCTTCGA 4152 Query 55311 GTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCT 55370 | || ||||||||||| || | ||| |||| | | || | | ||| | | Sbjct 4153 GACG-ATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCACGGAATTGGGTCCTT 4211 Query 55371 ACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCA 55430 |||||||||||| | || || || ||||| | |||||||||| | |||||| Sbjct 4212 ACGAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGGGC- 4270 Query 55431 AGTCTGACCC-CATGT-----TTG--ACAAGT------TGAAGCATGACATTCACTTGTG 55476 ||| ||| ||| | ||| || | | || ||||| | | Sbjct 4271 -GTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATCAAACA 4329 Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 || || || ||||| ||||| || || || ||||| || || || |||||||||||| | Sbjct 4330 CGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCT 4389 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGC 55596 ||||||||||||| | ||||||| |||||| ||||||| ||| || || | || Sbjct 4390 GGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTTTTGGC 4449 Query 55597 AGGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAA 55653 |||||||| || |||| |||||| | || | ||||| || || || || Sbjct 4450 TGGTGAGTT---CACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCAT 4506 Query 55654 GTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT--- 55710 |||| ||| | | | | ||| || | || || || || ||||| | Sbjct 4507 TTGGACGCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAAGGTCAA 4566 Query 55711 GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 ||| ||||| | | ||||||| ||| ||||||||||||||| |||||| Sbjct 4567 GGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGC 4626 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | | | ||| || ||||| ||||| || || ||| |||| ||||| ||||||| Sbjct 4627 TGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACAT 4686 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 | ||| | | || | | ||| ||| || ||||||||||||| |||||||| Sbjct 4687 CCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAA 4746 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||||||||||| || |||||||| |||| Sbjct 4747 GGGACTCAAGACCGGCATGTACTACATGCG 4776 >seq2914 Length=83898 Score = 118 bits (130), Expect = 1e-21 Identities = 190/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| ||||| | || || || ||||| |||||| ||| || || ||||| || Sbjct 18218 CGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTG 18277 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || ||||| |||| |||||||| | ||| |||| || || Sbjct 18278 ACCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGAC 18337 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| || | ||||| ||||||||||| || || ||||| | ||| || Sbjct 18338 AATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACC 18397 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| |||||||||| || |||| || || || | ||| ||| | | || Sbjct 18398 AGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAAC 18457 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || ||| | ||| || ||||| Sbjct 18458 CTTCCGCTGCGAGATTTTGAGACCATCGACCAC 18490 Score = 102 bits (112), Expect = 9e-17 Identities = 147/204 (72%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 18219 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 18278 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || || |||||| |||| ||||| |||| || |||| ||||||| Sbjct 18279 CCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGACA 18338 Query 117425 ATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGT 117479 ||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 18339 ATCGTCGAGTGTAACGAGGCT----TCTCCGTGGTGATAAGCTGTGTGCTCACTGCA-GT 18393 Query 117480 AGCCCGCCAGCTGAGCCACCTTCA 117503 | || ||||||||||||||||||| Sbjct 18394 AACCAGCCAGCTGAGCCACCTTCA 18417 >seq6281 Length=24111 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 117297 CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTAC 117356 ||||| |||||||| ||||||| || || | || || ||||| |||||||||| Sbjct 13354 CTAGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTAC 13413 Query 117357 CGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 |||| || ||| |||| || |||| | ||||||| ||| || |||| || |||| Sbjct 13414 CGAACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCA 13473 Query 117417 AGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || || || || || || || |||||| || || || || | ||||| | || Sbjct 13474 TATTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACA 13533 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||| |||| ||| |||||||| Sbjct 13534 CGTAGCCAGCCAACTGTGCCACCTT 13558 >seq4880 Length=46859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/369 (67%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | || || ||| || ||| ||| ||||||||| || Sbjct 41345 CGCGAGCTCTACAAACTCACGCACACTATGACACTCTCCAGTGGCAACCACGAAATCCTC 41286 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 |||| | ||||| | ||| ||||||| || |||||||| ||||| ||||| Sbjct 41285 GGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCCACGTAGTCTCGAGCGTGGCCCCA 41226 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG-TTCC------ 124653 |||||||| ||| || ||||| || | | | ||| || ||| | |||| Sbjct 41225 GTCGCGCTGGGCGTCGAGGTTGCCTA--TAAACAGGC--AGC--TCTCGATTCCAGCGTG 41172 Query 124654 ACTCCG--CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGA 124711 | | || ||| | | || || || ||||| ||||| | |||||||| | Sbjct 41171 AATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAGTTGGTCCGCGTCGAGGACT 41112 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| || || || |||| || || | ||||| | | || Sbjct 41111 CTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCATAAGCTTCGCGAT-GGTTAA 41053 Query 124772 CGTCA-TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 | || ||||||| |||| |||| | ||| |||||||| || || | |||||| | Sbjct 41052 CTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGTG 40993 Query 124831 TGTTTTCAT 124839 |||| |||| Sbjct 40992 TGTTCTCAT 40984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547170006495200