Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4771 295 8e-75 seq3030 163 3e-35 seq4691 143 3e-29 seq2928 127 2e-24 seq2914 113 5e-20 seq4119 98.7 1e-15 >seq4771 Length=9300 Score = 295 bits (326), Expect = 8e-75 Identities = 1064/1645 (65%), Gaps = 46/1645 (3%) Strand=Plus/Minus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| ||||||||||| |||||||| ||||||||||| |||| | |||||| || | Sbjct 4776 CGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTC 4717 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 ||||| | || |||| | ||| |||||||| |||||| ||| ||||| || Sbjct 4716 AGCTTACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAA 4657 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | || | ||| || || ||||| || || Sbjct 4656 GCGCCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTG 4597 Query 80221 TACACCTTACGAAGCTCCTCTGGAATGTCCA-GA--TTTTGCACACTGCCACCGTCCTTT 80277 ||| || || || || ||||||||| || || ||||| |||||| || || Sbjct 4596 TACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTC 4537 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | ||| ||||| | ||| | |||||| | || |||| | || || |||| || Sbjct 4536 AGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGA 4477 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||||| || ||||| || || | ||||| |||| ||| | ||| Sbjct 4476 TACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGACGTG 4417 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 |||||||| | | ||||||||| || ||||||||||||||| || |||||||| || Sbjct 4416 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 4357 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | |||| ||| || || || || ||||| || ||| || || | | | ||| Sbjct 4356 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTGATGACGTCATCTTTTAGTGCGGCCCAG 4297 Query 80518 AAATCAACCCCA----ACGCTGTGA--CCCCACATGTCGTGCTGCAAGATGCCCTCCGAC 80571 || |||| | | ||||| |||||||||||| ||| ||||| |||| Sbjct 4296 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 4237 Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTTGGCCAGCTC---ACAC 80625 |||||||| ||| |||||||||||| || ||| |||| |||| | ||| || Sbjct 4236 GCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCG---TGGCAATCTCCATCGAC 4180 Query 80626 GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCC 80685 | |||||| ||| || || || ||| |||| | |||||||| | || || Sbjct 4179 GTCTCCAT---GGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCT 4123 Query 80686 TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCG 80745 |||||| ||||||| || ||| | |||||| | || ||||| ||||| ||||| Sbjct 4122 TGTGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCA 4063 Query 80746 ATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 || | || || || |||||| |||| || | || ||||| | || || ||| |||| Sbjct 4062 ATACCAATGGGACGATGGCGCATGTTGGACTTGC-GAGCCTCTGCAACAGGATAATAGTT 4004 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 |||||||| ||| |||||||| || | ||| || |||| ||| ||| Sbjct 4003 GACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTT 3944 Query 80865 AAAGTCGAATTGGTTCCCCTT--CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 ||||||| || || |||||| || || || ||||||| |||||| Sbjct 3943 GTAGTCGAA--CACACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCAC 3886 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || |||||||| || | || |||| | || ||| ||| || || || Sbjct 3885 ACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGG 3826 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||||| ||| | |||||| |||||| ||| |||||||||||| |||| | Sbjct 3825 ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAG 3766 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 || || ||||| | ||| | | ||||| ||| ||| | || | || |||| Sbjct 3765 GGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT 3706 Query 81103 ACCTTGCG-GAATTTGCCTTCGGCCACATACTTGGCGTA---AGCTTCGTCGAACT--TG 81156 ||| || | | | ||||| | | ||||| | || |||| || |||| | Sbjct 3705 GTCTTACGCGCACGT-CCTTCCTTCTCGTACTTTTCATACAGAGCT---TCAAACTCATC 3650 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 || || | || || | || ||||| || || | || ||| | | Sbjct 3649 GCCCCAGCA--CTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCA 3592 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | | ||| || ||||||||| ||||| | ||| || ||| |||| ||||||| Sbjct 3591 TTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGG 3532 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| | ||||| ||| ||||| |||| || || || || | | ||| || Sbjct 3531 GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCG 3472 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACG 81393 ||||| ||||||| || | |||| ||| |||||||| || || ||||||| || Sbjct 3471 TGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACA 3412 Query 81394 TAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTC 81453 || || || || ||||||| ||||||||||| ||||| || || | || |||||| Sbjct 3411 TAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTC 3352 Query 81454 GTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCAC 81511 || || ||| | | | ||||||| | ||| || | |||||| || | Sbjct 3351 GTGCCGCGGAT--GTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGC 3294 Query 81512 CTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTAT 81571 | | ||| || || || || || | || | ||| || ||||| ||||| || | Sbjct 3293 CCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGT 3234 Query 81572 CTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGA 81631 | | | ||| | | | ||| || |||| |||||| | | | |||||| |||| Sbjct 3233 CATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGA 3174 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAA 81656 | || || ||||| ||||| |||| Sbjct 3173 AGAGAGTAGGGGTGGCGTGCGTGAA 3149 >seq3030 Length=90490 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| |||||||| || || || || || ||| | Sbjct 71798 AATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 71739 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||||| ||| | ||| ||||||||||||||||||||||| || || ||||| Sbjct 71738 GGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGACCA 71679 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 71678 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTACAA 71619 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || ||||| Sbjct 71618 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 71571 >seq4691 Length=143056 Score = 143 bits (158), Expect = 3e-29 Identities = 369/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 64297 TTCCCAATT-AGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTG 64355 ||||| ||| ||| || | || ||||| || | |||||||||||| || ||||| Sbjct 52918 TTCCCCATTCAGGAACAC-GAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 52976 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACA 64415 ||||| |||||| | || || | | || |||| |||||| || || | | ||| Sbjct 52977 GACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAGCTCA-CGGACA 53035 Query 64416 G-GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGT 64474 || | |||||||||||| || || || ||||||||| | |||||||| || ||| Sbjct 53036 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 53095 Query 64475 TTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCT 64534 ||||| |||| | | || || | || || || ||| | || ||||| || | |||| Sbjct 53096 ACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCT 53155 Query 64535 ATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACA 64594 ||| | ||| | || | ||||| ||| || || || | ||||||| Sbjct 53156 ATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACA 53215 Query 64595 AGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCG 64654 || | ||| | |||||||||| || | | || || ||||| | || Sbjct 53216 CGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTT 53275 Query 64655 CTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATC---GTGGGTCGTCGTTTG 64711 ||| || || |||||| | ||||| || |||| | | ||| || || | Sbjct 53276 GTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTACC 53335 Query 64712 GTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT 64771 |||| || ||||| || ||||||||| || ||||| || || || ||||| | Sbjct 53336 CGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCT 53395 Query 64772 CTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGA 64831 | || || |||||||| ||||| ||||| ||||| |||||| || ||||||||||| | Sbjct 53396 CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCA 53455 Query 64832 TCTCTCGGGACGAGGG 64847 || ||| |||||||| Sbjct 53456 TCAGTCGTGACGAGGG 53471 >seq2928 Length=26498 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| | || |||||||| || || || || || ||| | Sbjct 7469 ATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 7410 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||||||||| || || ||| Sbjct 7409 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGAC 7350 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 7349 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 7290 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 7289 AACATCCAGAAGG 7277 >seq2914 Length=83898 Score = 113 bits (124), Expect = 5e-20 Identities = 205/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | |||| || | ||| |||| || || ||||| || ||||| ||||| Sbjct 18514 GATAACCAGCGATCGCTGCCATCGGTGGTCGATGGTCTCAAAATCTCGCAGCGGAAGGTT 18455 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 | | ||| || | || || || ||||||| |||||||||| |||||| | || Sbjct 18454 CTGTTCGCTTGTTTAAAACGCAAGCTTACGAGTGAAGTGAAGGTGGCTCAGCTGGCTGGT 18395 Query 32074 TACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 ||| |||| |||| || || ||||||||||| || || ||| | || || |||| Sbjct 18394 TACT--GCAGTGAGCACACAGCTTATCACCACGGAGAAGCCTCGTTACACTCGACGATTG 18337 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 ||||| | || ||| |||| || || | ||||||||| |||| | || || || | Sbjct 18336 TCAACATGGCGCAGGACTTCGTGGGGTCCAATAACCTGCCGCTACTGTACCCGTCAGGTC 18277 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | ||||| || || || ||||| ||||| ||||| || | || || |||||||| Sbjct 18276 AATTTGGTACTCGACTGCAAGGTGGTAAGGACGCTGCTAGTCCTCGATATATCTTCAC 18219 >seq4119 Length=9781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || || || || |||||||||||| | || || ||||| ||| Sbjct 9772 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 9713 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || || || ||||| || |||| ||||| || |||||||| Sbjct 9712 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACTCTTCAC 9653 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || || ||||||| || || ||| Sbjct 9652 CTGGTGCTGCGTCTGCGTGGCGGA 9629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570262465410880