Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2482 190 2e-43 >seq2482 Length=72606 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||||| ||||| |||| |||| || || | |||||||| |||||| Sbjct 71616 TTTCCATTGCTGACGACCAAACGGGTGTTCTGGCGAGGTGTAGCTGAGGAGCTACTGTGG 71675 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA-----AGATCT 34334 || | || || | ||| | || | | ||| | | | | || | || | Sbjct 71676 TTTATTAGTGGAGACACAAGTGCCCA----CACTC-TGCAGCAGAAAGATATTCATATTT 71730 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||||| | || || || || | |||||| | || || | | |||||||| | Sbjct 71731 GGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAGGATCGGGAGGTTG 71790 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA 34454 | ||| | || ||||| ||||| ||||||||| | |||||||| || |||| || | Sbjct 71791 GAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGACA 71850 Query 34455 GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTG 34513 | || ||||| | || || || | ||||||||| |||| | ||||| ||| || Sbjct 71851 TGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAG-AGGTGATTCACAAGCTG 71909 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||| |||| ||||||| ||| ||| |||||||||||| |||||| Sbjct 71910 CGTACGAATCCTACTGACCGAAGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAAC 71969 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||| || || || ||||||| ||||||| |||||||| || || ||||| | Sbjct 71970 GAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTA 72029 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || ||||||| |||||||| | || ||||| ||||||||||| Sbjct 72030 TCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCC 72089 Query 34694 AGTTACGCTCTGCTCAC 34710 || ||||| ||||| || Sbjct 72090 AGCTACGCGCTGCTGAC 72106 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| || ||||||||||| ||||| || | |||||||| ||||||| Sbjct 72106 GTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGC 72047 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | ||| || || | ||||| || || |||||||| ||||||| ||||||| Sbjct 72046 TGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAA 71987 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || |||||| |||||| |||||||||||| ||| ||| ||||||| | Sbjct 71986 GGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCTTCGG 71927 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 ||| ||| ||| || ||| ||||| | |||| ||||||||| | || || || Sbjct 71926 TCAGTAGGATTCGTACGCAGCTTGTGAATCACCT-CTGCTAGCTGGTCCACACCTTGGCC 71868 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| || | | || |||| || |||||||| | ||||||||| ||||| Sbjct 71867 AGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTA 71808 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || |||||||| | | || || | |||||| | || || Sbjct 71807 AACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCG 71748 Query 6994 AGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGACGAGAGCTCCTTGGTGTTC 7048 || || | ||||||| || | || | | | | ||| | | || | Sbjct 71747 CGATCCATTGCCGTCCCAAATATGAATATCTTTCTGCTGCA-GAGTG----TGGGCACTT 71693 Query 7049 GTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTC 7108 ||| | || || | |||||||| |||||||| | || || |||| |||| ||||| Sbjct 71692 GTGTCTCCACTAATAAACCACAGTAGCTCCTCAGCTACACCTCGCCAGAACACCCGTTTG 71633 Query 7109 GTCGTCAGCAGCGGAAA 7125 |||||||||| ||||| Sbjct 71632 GTCGTCAGCAATGGAAA 71616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224723545280