Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3030 141 2e-28 seq2928 118 3e-21 seq4771 109 1e-18 seq4119 107 5e-18 seq4120 105 2e-17 seq6148 84.2 5e-11 >seq3030 Length=90490 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || ||| Sbjct 71576 ACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGT 71635 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 71636 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCC 71695 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || || ||||| ||| || ||| |||| || | |||||||| | Sbjct 71696 CTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAG 71755 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 |||||| ||||||||||| | || || | ||| | |||||||| || Sbjct 71756 CGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTCTG 71803 >seq2928 Length=26498 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 7309 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCC 7368 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 7369 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 7428 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||| || || Sbjct 7429 ATGGTCTTGCCCGTCAAGGTCTT 7451 >seq4771 Length=9300 Score = 109 bits (120), Expect = 1e-18 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGATG 193582 ||||| ||||||| |||||||||| ||| ||| |||||| | || || | || Sbjct 3786 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAA- 3728 Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642 ||| || | ||||| || | |||| | | || ||||||| ||||||||||||| || Sbjct 3727 CCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATA 3668 Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702 ||| | ||||| || | || || |||| ||||| |||||||| || || || || Sbjct 3667 CAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAA 3608 Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAG 193749 | |||||| | |||| ||||| |||||||||||||| |||| Sbjct 3607 CAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAG 3561 >seq4119 Length=9781 Score = 107 bits (118), Expect = 5e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| ||||| || || || |||| ||||| || || || Sbjct 9635 ACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGT 9694 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || ||||| ||||| || || Sbjct 9695 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 9754 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| |||||||||||||| || Sbjct 9755 TTCCTTGTCCTGGATCTTTTGCTTGAC 9781 >seq4120 Length=3454 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| || ||||||||||| |||||||||||||| || ||||| Sbjct 2 CGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATC 61 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 | ||| || | |||||||| | ||||||||||||||| ||||| || || | ||| | Sbjct 62 GAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATC 121 Query 225709 TGCATTTT 225716 ||||| || Sbjct 122 TGCATCTT 129 >seq6148 Length=1366 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| ||||| ||| ||||||||||||| ||||| || || | | Sbjct 718 AGAGTTGGTAAGGTTCTGCGCGTTTTATTGAATTAAACCACATGCTCCAACGATTGTGTA 659 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTA-GTACTCAGGTGGA-ATAT 7848 | || |||| | || |||||| ||| || |||||| | || | ||||| ||| | | Sbjct 658 AACTCCCGTGAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTTCAGGCGGAGAGCT 599 Query 7849 TTACGCGTTAGCTTAATTA-ATATAAAAA 7876 | | ||||||||| |||| || |||||| Sbjct 598 TAATGCGTTAGCT--ATTATATCTAAAAA 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192428461946456