Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3030 165 2e-35 seq2928 149 1e-30 seq4691 123 5e-23 seq4119 116 8e-21 seq2914 109 1e-18 seq4120 107 4e-18 seq6281 102 2e-16 seq3282 95.1 3e-14 >seq3030 Length=90490 Score = 165 bits (182), Expect = 2e-35 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || || || |||||||||||||| | Sbjct 71570 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 71629 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 71630 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 71689 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| || || || ||| || || | || || ||||||| | || | Sbjct 71690 GATTCCCTCCTTGTCCTGAATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCA 71748 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 71749 CGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 71801 >seq2928 Length=26498 Score = 149 bits (164), Expect = 1e-30 Identities = 148/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 7279 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7338 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 7339 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 7397 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| |||||||| ||||| || || Sbjct 7398 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 7457 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 7458 GATCTGCAT 7466 >seq4691 Length=143056 Score = 123 bits (136), Expect = 5e-23 Identities = 602/939 (64%), Gaps = 33/939 (4%) Strand=Plus/Plus Query 229536 TTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGG 229595 ||||| ||||| | | ||| | ||| | ||||| ||||| || | ||| |||| ||| Sbjct 52918 TTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGG 52977 Query 229596 ACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACGA 229654 || | ||||| || ||| |||| ||| || |||||| || || |||| || Sbjct 52978 ACGGCTGAGGAGCTCGACCTTG-TGCACGACCTCAAGGACTGGAGCAAG---CTCACGGA 53033 Query 229655 CGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGT 229714 | | || || || |||||||||||| | |||| || || |||| ||||||||||| Sbjct 53034 CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGT 53093 Query 229715 GATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTT 229774 || || |||||| | ||||||||| |||||| ||| || ||||| || || Sbjct 53094 GAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTT 53153 Query 229775 TTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGA 229834 || | | ||||| || ||| |||| ||||| || | || || ||||| Sbjct 53154 CTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGA 53213 Query 229835 CGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCCC 229894 | || ||| |||| | ||| | | | || | ||||| || | |||||| Sbjct 53214 CACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCC 53273 Query 229895 GGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAA---TCGTT 229951 ||| || || || | ||||| | |||||| || || || | || | Sbjct 53274 TTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTA 53333 Query 229952 TGCAGAGCGTCTCGTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCT 230010 | ||||| || | || | | ||| || || || || | ||||| || ||||| Sbjct 53334 CCCGGAGCGCCTGCTGGCTTTCG-CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCT 53392 Query 230011 GCGCCATCTTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACG 230067 || |||||||||||||| || ||| ||| |||||||||| || | | ||||||| Sbjct 53393 GCTCCATCTTTTGGCTA---AAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 53449 Query 230068 AATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGAAGC 230127 | ||||||| | ||||| || | ||| | | || | | | ||||| || |||| Sbjct 53450 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 53509 Query 230128 TAAATAACAAACTACCTTTCGA-AACGGTG-AAAC-AAATCGTCACAGAAGTAGTTGCAA 230184 | | ||| || || || | | ||| | || | ||| | || | || | | Sbjct 53510 TGGTCACCAAGCTGCC---AGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTGA 53566 Query 230185 ATGAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGAT 230243 ||| | ||||| | | ||| | | ||| || | || || || ||||| ||| Sbjct 53567 TTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAG-CTGATTGGTATGAACTCTGCC 53625 Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG---GTAC 230300 |||||| | || || || || ||||| ||||| ||| | || |||| || || | Sbjct 53626 CTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTCC 53685 Query 230301 GAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGG 230360 ||| | || || | |||||||| || | | ||||| | || || ||||| || Sbjct 53686 AAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 53742 Query 230361 AAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGCC--CGGTGTATTAAAA 230417 || || ||||| ||||| |||||||| |||| || || |||||| || || | Sbjct 53743 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCCGGCGTTGGTGTCGCC 53802 Query 230418 CCTGAGGATAATGTTTTCGCTATGGACGGTGACTTTTAA 230456 ||||||| | |||||| || |||| | ||||||||| Sbjct 53803 GCTGAGGAGCAGGTTTTCACTCTGGATGCGGACTTTTAA 53841 >seq4119 Length=9781 Score = 116 bits (128), Expect = 8e-21 Identities = 116/149 (78%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | || || || ||||||||||||||| Sbjct 9630 CCGCCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCACTC 9689 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||||||| || |||||| ||| Sbjct 9690 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9749 Query 282993 ATACCCTCCTTGTCTTGGATC-TTTGCTT 283020 || || |||||||| |||||| ||||||| Sbjct 9750 ATGCCTTCCTTGTCCTGGATCTTTTGCTT 9778 >seq2914 Length=83898 Score = 109 bits (120), Expect = 1e-18 Identities = 292/443 (66%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || || || | |||||||| || | |||| ||||| || || Sbjct 18059 AGACCAACCCGTACCGATTCCTTCCGCCCCATTCACAAGCAACATCGGAATAATAGGCAC 18118 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || | ||||||| |||||||||| ||| |||| || || || Sbjct 18119 GTAGTACACTGGCTCAACAGGGAAGCCATCGTCGTCGGCGTAGCGTAACAGCGCGTCGTC 18178 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 || ||| ||| || || || | |||| |||||| || || | | ||| Sbjct 18179 TTCTTCGGGGAATACCAAGCGAGTGTGCTTCTGCAGTAACGTGAAGATATATCGAGGACT 18238 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCT-CGGG--CAGTAGC-- 273854 ||| |||||| ||||||||||| | | |||||| ||||| |||| ||||||| Sbjct 18239 AGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGACCTGACGGGTACAGTAGCGG 18298 Query 273855 CAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGG 273914 ||| |||| || || ||| | ||||| ||||| || || || ||| || | Sbjct 18299 CAGGTTAT-----TGGACCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGTAAC 18353 Query 273915 GATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACC 273974 || | || ||||||||||| || |||| || | |||||| | |||||| ||| Sbjct 18354 GAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACCAGCCAGCTGAGCCACC 18413 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGC 274034 ||||| || ||||| | || || || || | ||| ||||||||||||||| Sbjct 18414 TTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAACCTTCCGCTGCGAGATT 18473 Query 274035 TTGAACCCATCAACGACCGATGG 274057 |||| ||||| || |||||||| Sbjct 18474 TTGAGACCATCGACCACCGATGG 18496 >seq4120 Length=3454 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||| || |||||| ||| || || |||||||| ||||||||| || ||| | ||||| Sbjct 1 ACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGAT 60 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 | |||||||| || || || || ||||||||||| || ||||| ||||| ||||| || Sbjct 61 CGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAAT 120 Query 283094 CTGCATTTT 283102 |||||| || Sbjct 121 CTGCATCTT 129 >seq6281 Length=24111 Score = 102 bits (112), Expect = 2e-16 Identities = 254/383 (66%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | ||||| | |||||||| || || |||||| | || ||||| Sbjct 13179 GGGTTGTAGTTGGGAACTGAGCTGGACCAACCCGTTCCGATACCGTCACTGCCGTTCACG 13238 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | ||||||||||||| || |||| ||||| || | || || || | Sbjct 13239 AGCACCATGGGGATAATTGGGATGTACCATTCCGGCTCGATGGACTGGCCGTCTTCATTC 13298 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 || ||||||| || | | ||| | | || | | || || | | | || Sbjct 13299 AGATACTTCAGACAATCGTTGTCCAAAGGATCGTAGATACGGCGAGTAAGCTGCTCTAGG 13358 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || |||||||| || | ||||| || ||| || ||||| ||| | || ||| ||| Sbjct 13359 TTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCGAAC 13418 Query 273837 TGACCC-TCGGG--CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 13419 TGACCAATCGGGGACAGTAG---GTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13475 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||||||| ||||| || | ||| ||||| || ||||| ||| || | | Sbjct 13476 TTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 13535 Query 273954 TAACCACTGAACTGAGCAACCTT 273976 || ||| ||||| || ||||| Sbjct 13536 TAGCCAGCCAACTGTGCCACCTT 13558 >seq3282 Length=26433 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| Sbjct 16041 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGG 15982 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 15981 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGC 15922 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| | || || |||| || || || ||| Sbjct 15921 TTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGAC 15862 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGAT 316373 || || || ||||| |||| ||| |||| Sbjct 15861 TTACCGGCACCGTTGGGTCCCAGCACAGCGAT 15830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046649022109496