Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3280 141 2e-28 seq4740 122 2e-22 seq6276 87.8 4e-12 seq2898 87.8 4e-12 >seq3280 Length=26141 Score = 141 bits (156), Expect = 2e-28 Identities = 671/1053 (64%), Gaps = 45/1053 (4%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 16025 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 15966 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||| ||||| ||||| || ||||| || | |||||| || || Sbjct 15965 GTGCGACTCAATGTGGTGAAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 15906 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| || ||||| |||| ||| || || || Sbjct 15905 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 15846 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCG-ATACCTGGGCAT 319228 || || |||||||| |||| |||| |||| | | || | | || | || Sbjct 15845 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGTCA-CAG 15787 Query 319229 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 319287 | ||||| | | || | |||||| |||| | || ||| || || Sbjct 15786 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTACGA-ACAGTTGGTCAGA 15728 Query 319288 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 319347 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 15727 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 15668 Query 319348 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 319404 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 15667 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 15611 Query 319405 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 319464 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 15610 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 15554 Query 319465 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 319524 || ||| || || ||||||||| || |||||||| ||||| || | | | | |||| Sbjct 15553 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTAACG 15494 Query 319525 TCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTG 319584 | | ||| | ||||||| | || ||| ||||| ||| | ||||| Sbjct 15493 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 15434 Query 319585 GTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 319644 || ||||| ||||||||||| | | || ||| | | ||| ||||| || || | ||| Sbjct 15433 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 15374 Query 319645 TTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATC---- 319700 ||||| ||||| || || ||||| || | || ||| || || || Sbjct 15373 TTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCATCTCGGGG 15320 Query 319701 --AAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTT 319758 ||||| || | ||||| | ||| || | || | | |||| ||| Sbjct 15319 GTGAAGCCGACACCAGCAAGAGTGTCTTCGACCTCCTTGCGGGGC---GTGTT---CTTC 15266 Query 319759 ACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCG--- 319815 | | ||||| | |||||||| | | || | || |||| | | ||| Sbjct 15265 AGGTCGTCATCGATCAGGATGAAGTCCACAA----CG-GACAG-CTCGGCCTCCTCGGCC 15212 Query 319816 ---AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAG 319871 || | ||| || ||| | |||| || | ||| ||| | |||||| || ||||| Sbjct 15211 TGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCAT-CGCGGCTGGGGAATCCCTCAAG 15153 Query 319872 CTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAG 319931 ||||||||| || || ||||||||||| || ||||| ||||| || || ||||| Sbjct 15152 CTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACCGTTGGGACCGCACAG 15093 Query 319932 ACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACC 319991 |||||| |||| || || || ||| | || | ||||||||| ||||| | ||||| Sbjct 15092 ACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACCACC 15033 Query 319992 ATATGCCAGAGAAAATTCACAATCACACAGATC 320024 || || || || || || || | ||||| || Sbjct 15032 GTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 15000 >seq4740 Length=106065 Score = 122 bits (134), Expect = 2e-22 Identities = 557/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| || || | | ||| ||||| | ||||||||||| || | ||| | ||||| Sbjct 15955 GTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 16014 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| ||||||| | || | ||| ||| || |||||| | || |||| | Sbjct 16015 GACGGCTGAGGA-GCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAG---CTCACGG 16070 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | || | || ||||||| | || ||||| | Sbjct 16071 ACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCG 16130 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || || | ||||| || ||||| ||| || ||||| || | Sbjct 16131 TGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCT 16190 Query 229997 TTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTT 230052 | |||| | ||| | |||| | ||| || || || || || | ||||| Sbjct 16191 TCTATGGCTTCCAGATCGCCATTGA--GAAC--ATTCACTCGGAGGTCTACTCACTGCTC 16246 Query 230053 ATCGACGCGCTTATTTCCGACGAG--CAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 || ||| || || |||| | | |||| | || | || | ||||||||| | Sbjct 16247 ATTGACACGTACATCAAGGACGCGATCGAGAAGG--ACCATCTCCTGCGTGCCATTGAGA 16304 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || || ||||| | ||||| | || ||| || || || || Sbjct 16305 CCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTAT 16364 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 | | | || ||||| || | || | | ||| ||||| || | || || || Sbjct 16365 CCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 16424 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 ||||||| ||||||||||||| ||| || | ||||| || || | | || | Sbjct 16425 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 16484 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| |||||||||| |||||||| | || | |||| | ||| |||| || | Sbjct 16485 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCA 16544 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGTTGAA 230406 |||| | |||||| || ||| || | || | |||||| || || || | Sbjct 16545 AGCTGGTCACCAAGCTGCCGGA-GAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTG 16603 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | || | ||||| | ||||| | | || ||| | || ||||| |||||| ||| Sbjct 16604 ATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCTGC 16662 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---TA 230522 || ||| | |||||||| || ||||| || ||||| | | | |||||| | Sbjct 16663 CCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTC 16722 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | ||| | ||| || |||||||||| |||| | ||||| | || || || ||||| Sbjct 16723 CAAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGG 16779 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||| ||||| |||||||| Sbjct 16780 CAAGACCAACTTTTTCGAGAAGCGTGT 16806 >seq6276 Length=26186 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 || || ||||| ||||| | ||||| || ||||||||||||| ||| | || || Sbjct 13833 AGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCG 13892 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 |||||||| ||| ||| || ||||| ||||| || ||| | ||||| |||| Sbjct 13893 AACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13952 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA 281915 || ||||| ||||| || | ||||||||| || ||||| ||| || | || Sbjct 13953 TTCACGATACAGCCCTGCAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 14012 Query 281916 TAACCACTGAACTGTGCTACCTT 281938 || ||| |||||||| ||||| Sbjct 14013 TAGCCAGCCAACTGTGCCACCTT 14035 >seq2898 Length=40630 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 281735 CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 |||| |||||||||||| | | ||| || ||| |||||||| ||||| | | || Sbjct 14080 CAGTAACGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACC 14139 Query 281795 AAACTGACCCTCCGGCAACA--ACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCC 281852 ||| ||||| ||| ||| | | | | ||||||| ||| ||| | ||||| ||| Sbjct 14140 AAATTGACCTGACGGGTACAGTAGCGGC--AGGTTATTGGACCCCACGAAGTCCTGCGCC 14197 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCA 281912 | |||||| || ||| || | ||| | || |||||||||||||| |||| || | Sbjct 14198 ATGTTGACAATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAGGCTGTGTGCTC-ACT 14256 Query 281913 ACA-TAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAA 281966 || |||||| | ||| || |||||||| || || | |||||||| ||| Sbjct 14257 GCAGTAACCAGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAA 14311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057731959064330