Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4812 163 3e-35 seq4740 141 1e-28 >seq4812 Length=10756 Score = 163 bits (180), Expect = 3e-35 Identities = 714/1125 (63%), Gaps = 6/1125 (1%) Strand=Plus/Minus Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 5088 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 5029 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 5028 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4969 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 | || || | ||| |||| || ||||||||| || | || || | || |||||| Sbjct 4968 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4909 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT 53689 || | || || |||||||| || | |||| | | || || || | | Sbjct 4908 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4849 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 |||||||| || || | ||| |||| || || || || ||||||| | || Sbjct 4848 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4789 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 || | || | || ||| | || || | ||| || || || || || ||||| Sbjct 4788 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4729 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||| |||| || ||||| || || ||||| ||| || || |||||||| | Sbjct 4728 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4669 Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCT 53928 |||| || || ||| | |||| || ||| | | | | || || || | Sbjct 4668 TCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCT-T 4610 Query 53929 TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 ||||| | ||||| ||||||||| || ||||| | || || |||||| Sbjct 4609 CTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGC 4550 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 4549 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4490 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 ||| | ||| || || ||| | || | || | || ||| || || ||||| Sbjct 4489 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTT 4430 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 ||||| |||||| | | | || | |||||||| |||||||| || | | Sbjct 4429 ACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGA 4370 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 || || || ||| ||||| || | || | ||| |||| ||| | || | ||| Sbjct 4369 GCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAA 4310 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||| || ||||| || || || | || || || ||| ||| ||||| | |||| || Sbjct 4309 CATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCG 4250 Query 54289 AATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4249 GATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 4192 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| || || || |||||||| ||| |||||| ||| | ||| ||||| | Sbjct 4191 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAA 4132 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 4131 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAAC 4072 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || | || | || | ||||||||| | || || | || || | | || || ||| Sbjct 4071 TTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCT 4012 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || ||||||| | ||| ||||| || | || || | |||| Sbjct 4011 AACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3967 >seq4740 Length=106065 Score = 141 bits (156), Expect = 1e-28 Identities = 385/581 (66%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 16530 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 16471 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 16470 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 16412 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-----CGCTG-TC 24307 || ||||| || || || || || | || | || || || ||| | || Sbjct 16411 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 16352 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 16351 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 16295 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | | ||||| || || || | || || | || || ||||| | || || Sbjct 16294 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 16235 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| |||||||| |||||||| || || || || ||||| || | |||||||| Sbjct 16234 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 16175 Query 24488 AATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 16174 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 16117 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 ||||| || || || | || || || || || | | |||| || || || || Sbjct 16116 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 16057 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 16056 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 15997 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 || || ||||| | ||| | || || | ||||| || || Sbjct 15996 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 15956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593671200457680