Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4740 329 3e-85 seq3009 161 1e-34 seq4161 129 6e-25 seq2912 127 2e-24 >seq4740 Length=106065 Score = 329 bits (364), Expect = 3e-85 Identities = 440/603 (73%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | |||||||| || | | || |||||| |||||| Sbjct 15932 GAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTAC 15991 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || || |||||||| || |||||||| | |||||| | ||||| || || | | | || Sbjct 15992 AAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAG 16051 Query 116710 CGACTGGGAGC--GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| ||| ||| | ||||||||||| || ||||||||||||||||| ||||| Sbjct 16052 -GACTGG-AGCAAGCTC-ACGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTC 16108 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||||| ||||| ||||| |||||||| ||| | | ||| | || ||| Sbjct 16109 TTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTG 16168 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| ||||||| || |||||||| ||||| ||||||||||| |||||| | |||||| Sbjct 16169 CAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCG 16228 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 || | || || ||||| ||||||||| | || |||||| || | | Sbjct 16229 GAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAAGGACCATCTC 16288 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| ||||| || || || |||| ||||||| | ||||| || ||| Sbjct 16289 CTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGG 16348 Query 117008 ATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || || || | | || ||| | ||||||||| |||| ||||| || || || || Sbjct 16349 TGCGACCCGC-GTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGG 16407 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | ||||||| |||||| |||| | |||| |||||||| ||||| |||||||||||||| Sbjct 16408 CATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCC 16467 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| |||| ||| |||||||||||| | |||||||| |||| ||||| || Sbjct 16468 CGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGC 16527 Query 117187 CTG 117189 ||| Sbjct 16528 CTG 16530 >seq3009 Length=30629 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| |||||||| ||||||| || | Sbjct 12127 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 12068 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||||| | | | ||||| | ||||||| ||||| ||||| ||||| | ||| Sbjct 12067 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 12008 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||| Sbjct 12007 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 11948 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | || ||||| || ||| |||| || | || || ||| Sbjct 11947 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGC 11894 >seq4161 Length=9822 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | ||||| || | | Sbjct 9765 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 9706 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || |||||||| | ||||| Sbjct 9705 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 9647 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 9646 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAA 9587 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | ||||| || || ||| |||| || | ||||| Sbjct 9586 CATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGTGGCGG 9539 >seq2912 Length=37157 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| |||||||| ||||||| || | | Sbjct 4698 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 4639 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 4638 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 4579 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 4578 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 4519 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 4518 ATCCAGAAGG 4509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175464330160