Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4045 111 3e-19 seq4740 109 1e-18 seq4822 91.5 3e-13 >seq4045 Length=54054 Score = 111 bits (122), Expect = 3e-19 Identities = 259/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| ||||| || || ||||||||||| || ||| |||| Sbjct 51740 CTACCCCACTTGCTGTTCTACGGACCTCCAGGTACTGGCAAGACGTCCACGATCGTGGCT 51681 Query 254061 CT--GGCCCGAACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | ||| | ||| || |||| | || || || | ||| | || |||||||| Sbjct 51680 GTGGGGCGCCAACTCT-TTGGCCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTGAA 51622 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || || || || || | | || || ||||| ||| |||||| ||| || || Sbjct 51621 CGCGTCGGATGACCGAGGTATCAAGGTGGTACGCGAGAAGGTCAAGAGCTTCGCCCAG-G 51563 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 || | | || ||| |||| ||||| || || || | | || || ||||| Sbjct 51562 GTGCCATCAGCAGTGCCA--GCGGCCTACCGCCCTTTAAAATCATCGTACTCGATGAGGC 51505 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 || ||||||||| ||||||||| || || || || || | |||||||| | ||| Sbjct 51504 CGATTCCATGACGGGCGACGCGCAATCTGCGCTGCGTCGCATGATGGAGAATTATTCCAA 51445 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCT 254354 || || || |||||||| | || |||||||| |||| ||||| | || |||| Sbjct 51444 GGTCACTCGCTTTTGCCTCATCTGTAACTACGTGAGTCG--CATCATTGAGCCTGTGGCC 51387 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||| || || || Sbjct 51386 TCGCGTTGTGCCAAATTCCGCTT 51364 >seq4740 Length=106065 Score = 109 bits (120), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 157197 AAAAGTCCGCATCCAAAC--AAAACTGCTGCTTCTCACGTTCGAGCAAAACCCCGGGCTT 157254 ||||||||||||||| | ||||| ||||| |||| ||| ||| |||| ||| Sbjct 16877 AAAAGTCCGCATCCAGAGTGAAAAC--CTGCTCCTCAGCGGCGACACCAACGCCGGCCTT 16820 Query 157255 GCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTC 157314 | ||||||| |||| | ||||| |||||||||||||| || |||||||| |||||||| Sbjct 16819 GGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTC 16760 Query 157315 CATCCACTCGAATGGGTT 157332 |||||| || || ||||| Sbjct 16759 CATCCAGTCAAAAGGGTT 16742 >seq4822 Length=16889 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 |||||||| || || ||||| |||||||||||||||||| | | ||| |||||||| Sbjct 14610 CTCTGAATGGGCTCAATGATCTTGGTGGAGTTGTTGCAGGCCAATGCGAATCGCGTCGTT 14669 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCT 115533 |||| | | ||||| | ||||| || ||||| || ||| |||||| ||||| Sbjct 14670 GCCGAGAAGATCTCCATAGTACGTCGTAGAGCCTGCTGGGCTGCAGCTGTCATTGAGTCG 14729 Query 115534 GCCTCGTCGAGAACGACAATCTT 115556 |||||||| | | ||| ||||| Sbjct 14730 GCCTCGTCCAATATGACGATCTT 14752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073672971921088