Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4812 280 1e-70 seq3009 138 1e-27 seq4161 131 1e-25 seq2912 113 4e-20 seq1880 86.0 6e-12 >seq4812 Length=10756 Score = 280 bits (310), Expect = 1e-70 Identities = 1213/1896 (64%), Gaps = 45/1896 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| || |||| || ||| ||| | || |||||||| Sbjct 5746 CTTGTCCACAGTGAACTGGATAGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 5687 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| |||||||| || || ||||||| || | | |||| Sbjct 5686 GGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGTCGG 5627 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||||||||| |||| | || || || || || | Sbjct 5626 GTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCCACGGTCAGCCGA 5567 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | | | | | || ||||| || ||||||||| | | | | || Sbjct 5566 CAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAACATC 5507 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT-TAA 22403 ||| || | || | |||| || || || || | | ||| ||| || Sbjct 5506 ATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAATCTGATTACGTAC 5447 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 | ||| ||| | |||| || | | || || | ||||| ||| || | | Sbjct 5446 TTCCGGCGT-CCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAACGATCG 5388 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | ||| || || || | ||| |||||||| ||| | || |||| ||| Sbjct 5387 TGAA-CTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGATAGAC 5329 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| |||||||| || || || |||||||| || || | ||| |||||| Sbjct 5328 TCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCAGCGAG 5269 Query 22583 TTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCCCA-----CAG 22635 || | | ||||| || ||| | | | | | || | ||||| ||| ||| Sbjct 5268 TTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGC--CCAGTTCCAAAGCCCAG 5211 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 || || || || || | ||||||| ||| | || || | || ||| ||||| Sbjct 5210 AT--GAAGGTGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 5156 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754 ||| | | |||| ||||| ||||| || || ||||| || || | || ||||| | Sbjct 5155 GCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGACGTCTCCATGG 5097 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCG 22813 | | | || || ||||||||||| |||||||||||||| || ||| ||| ||| Sbjct 5096 CAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGG-GCTCTCG 5038 Query 22814 TACGGCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 ||| | || ||| | | |||||| ||||||| |||||| ||||| ||||| || || Sbjct 5037 AACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGG 4979 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 || | || || ||| ||||| | | |||||| | || ||||| Sbjct 4978 ACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGAC 4919 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||| | ||| | || | | || | | ||||| | || Sbjct 4918 CTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACAC 4859 Query 22993 GCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTC 23052 || || | |||||| | | || | || || | ||||| || |||||||| Sbjct 4858 ACCGTTTT---CCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTC 4802 Query 23053 GTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAA 23112 || ||||||||||| | | |||| |||| ||||| | ||||| ||||| Sbjct 4801 ATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAA 4742 Query 23113 ATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGT 23172 || ||| || || || || | ||||||||||||||| | ||| ||||| Sbjct 4741 GTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGT 4682 Query 23173 CTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTA 23232 ||| | ||| | || | ||| || ||||| |||||||| | ||| ||| Sbjct 4681 CTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT-GTCTTACGCG 4623 Query 23233 CCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | | ||||| | ||||||||||| |||| || ||||| || | || | || ||| Sbjct 4622 CACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGT 4563 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGC 23348 ||| || || | || | ||||| | | ||||||| | | |||| || || | Sbjct 4562 ACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACTC 4506 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 |||| || ||||| || | ||| || ||||| |||| ||||||||||| | || Sbjct 4505 TCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT 4446 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | || ||| |||||| || ||||| || || |||||||| || ||||||||||| | Sbjct 4445 CATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCA 4386 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 ||| | || |||| |||| | |||| |||||||| || || || || ||||||| Sbjct 4385 AGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGT 4326 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||| |||| | | ||| || | | ||||| || | |||| | || ||| | Sbjct 4325 CGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCG--TTCG--TGCCGCGG 4270 Query 23589 TCGAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | || || || || | |||||| | || ||| || || || || |||| Sbjct 4269 ATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTA 4210 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || || |||||||| || || |||||||| |||||||| || ||| || | | Sbjct 4209 GAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATA 4150 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 || | | |||||| ||||||| || | ||||| |||| ||| || || ||| Sbjct 4149 GCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGG 4090 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||||||| ||| | | |||||| || | |||||| || | |||| | ||| Sbjct 4089 GTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATG 4030 Query 23825 TC-CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || |||| ||| || || | || || |||| ||||| | || || | ||| ||| Sbjct 4029 TCGCTCT-TGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCAC 3971 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||| || | ||| || || || | | ||| || || || || ||||| || Sbjct 3970 CTTGCCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTA 3911 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||||| || ||||| | |||||||| ||||| Sbjct 3910 CTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTCAA 3875 >seq3009 Length=30629 Score = 138 bits (152), Expect = 1e-27 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| || ||||| ||||||| || ||| Sbjct 12127 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 12068 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||||| | || | ||||| |||| ||| ||||||||| || | ||||| ||| Sbjct 12067 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 12008 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| ||| || || || Sbjct 12007 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 11948 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| || || ||||| || | ||| | || ||| ||||| Sbjct 11947 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGCAAGAAG 11888 Query 31426 CG 31427 || Sbjct 11887 CG 11886 >seq4161 Length=9822 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| |||||||| | ||||| || || || Sbjct 9765 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 9706 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || | || ||||||||||||| | ||||| |||||| Sbjct 9705 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 9646 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||| ||| |||| ||| || |||| || || ||| Sbjct 9645 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 9586 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || ||||| || | ||| | ||||| Sbjct 9585 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGTGGCGG 9539 >seq2912 Length=37157 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| |||| ||||| || ||||| ||||||| || || Sbjct 4702 AATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 4643 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 4642 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGA 4583 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 4582 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 4543 >seq1880 Length=23057 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| |||| ||||| || || ||| ||||||| || ||| Sbjct 125 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 66 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| || ||||||||||||| | ||||| ||| Sbjct 65 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 6 Query 31310 CAGCA 31314 ||||| Sbjct 5 CAGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728560004720