Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4812 159 5e-34 seq4740 150 2e-31 >seq4812 Length=10756 Score = 159 bits (176), Expect = 5e-34 Identities = 718/1129 (64%), Gaps = 14/1129 (1%) Strand=Plus/Minus Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 5088 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 5029 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 5028 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4969 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4968 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4909 Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT 65720 || | || || |||||||| || | |||| | | || || | || | || Sbjct 4908 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAA---CACACCGTTT 4852 Query 65721 ---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 |||||||| || || ||||| |||| || || || || ||||||| | | Sbjct 4851 TCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGAC 4792 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | || | || | || ||| | || || | ||| || || || || || ||| Sbjct 4791 GTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGA 4732 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 || ||| |||| || ||||| || || ||||| || || || ||||||||| Sbjct 4731 TTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGA 4672 Query 65898 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTT 65955 | |||| || || ||| | | || |||| || ||| | | | | || || Sbjct 4671 GCGTCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTC 4613 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 || | ||||| | ||||| ||| ||||| || ||||| | || || |||| Sbjct 4612 CT-TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAG 4554 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 || ||| | ||||| | ||| ||||| || | ||| ||||| ||||| |||| Sbjct 4553 GAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGA 4494 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 ||||||| | ||| || || ||| || || | || | || ||| || || | Sbjct 4493 GATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGT 4434 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 |||| ||||| |||||| | | | || |||||||| |||||||| || || | Sbjct 4433 TCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGA 4374 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 || || || ||| ||||| || | || | ||| |||| ||| | || | Sbjct 4373 ACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACAC 4314 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 |||||| || ||||| || || || | || || || ||| ||| ||||| | | | Sbjct 4313 GCAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGG 4254 Query 66316 CACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | || || | | | | |||| ||| || || || ||| ||||||||| | ||||| Sbjct 4253 CGCGGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCA 4196 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | |||| || || || |||||||| ||| |||||| ||| | ||| ||||| Sbjct 4195 TTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACA 4136 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 ||||| || |||| || || || || || | ||||| | |||||||| || Sbjct 4135 AGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAA 4076 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | || | || | || | ||||||||| | || || | || || | | || || Sbjct 4075 GAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGAT 4016 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 66602 |||| || ||||||| | ||| ||||| || | || || | |||| Sbjct 4015 GCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3967 >seq4740 Length=106065 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 16530 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 16471 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 16470 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 16412 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 36330 || ||||| || || || || || | || | ||| || || ||| ||| Sbjct 16411 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 16352 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 16351 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 16295 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | | ||||| || || || | || || | || || ||||| | || || Sbjct 16294 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 16235 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 | ||||| |||||||| |||||||| || || || || ||||| || | |||||||| Sbjct 16234 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 16175 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 36568 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 16174 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 16117 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||| || || || | || || || || || | | ||||| || || || || Sbjct 16116 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 16057 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 16056 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 15997 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 || || ||||| | ||| | || || | ||||| || || Sbjct 15996 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 15956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658116929356440