Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4740 183 4e-41 seq4812 181 2e-40 >seq4740 Length=106065 Score = 183 bits (202), Expect = 4e-41 Identities = 394/581 (68%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 16530 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 16471 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 16470 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 16412 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CGCTG-TC 50132 ||| ||||| || || || || || | || | ||| || || ||| | || Sbjct 16411 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 16352 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 16351 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 16295 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | | ||||| || || || | || || | || || || || | || || Sbjct 16294 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 16235 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 16234 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 16175 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||||||| | | || ||||| || || || || ||||| || ||||||||| Sbjct 16174 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 16117 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||| || || || | || || || || || ||| |||||| || || || || Sbjct 16116 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 16057 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 16056 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 15997 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || || ||||| | ||| | || || | || || ||||| Sbjct 15996 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 15956 >seq4812 Length=10756 Score = 181 bits (200), Expect = 2e-40 Identities = 720/1126 (64%), Gaps = 8/1126 (1%) Strand=Plus/Minus Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || || || ||||| || ||||| || | || | |||| |||| || || | || Sbjct 5088 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 5029 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 5028 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4969 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4968 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4909 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT 79599 || | || || |||||||| || | ||| | | || || || | | Sbjct 4908 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4849 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||||| || ||| ||||| |||| || || || || ||||||| | || Sbjct 4848 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4789 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || | || | ||| ||| | ||| || | || || || || || || ||||| Sbjct 4788 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4729 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 4728 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4669 Query 79780 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTC 79837 |||| || || ||| | | || |||| || ||| | || | | || || || Sbjct 4668 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4611 Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 | ||||| | | ||| | ||| ||||| || ||||| |||| | |||||| Sbjct 4610 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 4551 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 ||||| ||||| | ||| ||||| |||| ||| |||| ||||| ||||||| Sbjct 4550 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 4491 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| | ||| || || ||| | || | || | ||| ||| || || |||| Sbjct 4490 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 4431 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4430 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4371 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 ||| || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 4370 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4311 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 |||| || ||||| || || || | || || || ||| ||| ||||| | |||| | Sbjct 4310 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4251 Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4250 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4193 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||| || || || |||||||| || ||||| ||| | ||| ||||| Sbjct 4192 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4133 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 4132 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4073 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || | |||| || | ||||||||| | || || | || || | | || || || Sbjct 4072 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 4013 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 || ||| ||||||| | ||| ||||| || | || || | |||| Sbjct 4012 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718207827957240