Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4740 187 4e-42 seq4812 123 4e-23 seq1217 109 8e-19 seq2489 100 4e-16 >seq4740 Length=106065 Score = 187 bits (206), Expect = 4e-42 Identities = 599/893 (67%), Gaps = 46/893 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||||| ||||| |||| | || || | ||| | |||||||| || || |||||||||| Sbjct 15953 CTGTTCCCCATTCAGGAA-CACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTT 16011 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| || ||| |||| || || || | |||| | || ||| | | | | Sbjct 16012 CTGGACGGCTGAGGAGCTCGACCTTGTGCACG-ACCTCAAGGACTGGAGCAAGC---TCA 16067 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | |||||| | || || |||| | | |||||||| || | | || || | Sbjct 16068 CGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTA 16127 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 |||| ||||| || || | || || || ||| || || | || |||| || Sbjct 16128 TCGTGAACGAGAACTTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGC-TC 16184 Query 125231 GT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 || |||| || || ||||| ||| ||||||||| | |||||||| | ||||| | Sbjct 16185 GTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGC 16244 Query 125290 TGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAAT 125344 | ||||||| |||||| ||||||| || | || ||| ||| | || || Sbjct 16245 TCATTGACACGTACATCAAGGACGCGATCGAGAAGG---AC-CAT-CTCCTGCGTGCCAT 16299 Query 125345 CGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-C 125402 || || | || | | | ||| || |||||||| |||| | |||| ||| | Sbjct 16300 TGAGACCATCCCTTGTGTCACG-AAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGC 16358 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | | || || ||| | || | ||| |||| ||||| || || || ||||||||||| Sbjct 16359 GTGTA-TCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTC 16417 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 16418 TCGGGCTCTTTCTGCT-CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAG 16476 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||| | || ||| ||||||||| | ||| ||||| ||| || | Sbjct 16477 CTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTT 16536 Query 125582 GTTTCGCAACTATCTGCGTC-CCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATT 125639 || ||| ||| ||| || || ||| | ||| || | | | |||| | Sbjct 16537 GTACTCCAAG---CTG-GTCACCAAGCTGCCGGAG-AGCCGTGTACACGAGATCAT--TC 16589 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCAT 125698 || || || ||| ||| || || |||||| | || || || || || ||| | Sbjct 16590 GTGAC----GCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGC-T 16644 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 |||||| ||||||| || |||||| ||||||| ||||| ||||| || ||||| || Sbjct 16645 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 16704 Query 125759 GTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 ||| | ||| | | | |||||| ||| |||| ||||| || ||||| | ||| || Sbjct 16705 CTACTCGCTTGGTGTGTC-CAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACA 16763 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || | || ||||||||||||||||||||| || |||||||| Sbjct 16764 TGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 16816 >seq4812 Length=10756 Score = 123 bits (136), Expect = 4e-23 Identities = 317/475 (67%), Gaps = 6/475 (1%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||||||||| || |||||||| ||||| || || || | || |||| || ||| | Sbjct 4380 TCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 4439 Query 96970 GCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTC 97028 | ||| | |||| | ||| | ||||||||||| || || |||||||| ||| | ||| Sbjct 4440 GTAATGA-GCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTC 4498 Query 97029 ATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGT 97088 |||||| | || | | | |||| | ||||| | | || ||| || | || ||| Sbjct 4499 ATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGT 4558 Query 97089 CTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC 97148 |||| ||| ||||||||||| |||||||| || ||| |||||| | || || Sbjct 4559 CTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGA 4618 Query 97149 CG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGG 97206 || ||| |||| | || | || | | |||||| || ||| | ||| |||||| Sbjct 4619 CGTGCGCGTAAGAC-AATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGAC-GCTCAGA 4676 Query 97207 TAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAAC 97266 | ||||| ||| || | ||| ||||||||||| | | || ||||| || || | Sbjct 4677 TTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAATCAGC 4736 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 ||||||| || ||| | ||| | ||| ||| | | |||||| | || | Sbjct 4737 AGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCAC 4796 Query 97327 CGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || ||| |||||| ||| |||| || || ||||| | |||||| || Sbjct 4797 CCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA 4851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 98015 CATCCCGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC 98073 ||| ||||| || ||| | |||| |||||||| || |||||||| | | || | || Sbjct 5497 CATTCCGGATGATGTTAAGGAGAAG-TACAAGACGGTGTGGGAGAT--CAAGCAGAAGGC 5553 Query 98074 TGATC--GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 || || || || | || ||| | || | || || ||||||||| ||||| || | Sbjct 5554 TGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACAT 5613 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAA 98191 || | ||||| || || |||| |||| || || ||||||||||| ||||| || Sbjct 5614 CCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAA 5673 Query 98192 GGGCCTCAAGACGGGCATGTACTA 98215 ||| |||||||| ||||||||||| Sbjct 5674 GGGACTCAAGACCGGCATGTACTA 5697 >seq1217 Length=19483 Score = 109 bits (120), Expect = 8e-19 Identities = 218/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 6394 GAAACCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 6453 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| |||||| ||||| || || || Sbjct 6454 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCAGAGTAGGGCTGCACGTT 6513 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| |||| ||| || | | | || | || |||||||| || Sbjct 6514 GACGCCCCACTTCTCGG---CGTCCAGACCGTAGGCCGTCAGGGCGCGCTGCTGGCACAG 6570 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCC 127677 | ||||| ||||| | ||||||||| || ||||| ||| ||| ||| |||| Sbjct 6571 GATCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGACCC 6628 Query 127678 TCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAG 127737 || | |||||||||| |||| ||||| | || ||| || || | | | ||| ||| Sbjct 6629 TCGGCGTACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCACGCGAGGTGAAG 6688 Query 127738 TTTTCCGATGCGATCAACTC 127757 || ||||| ||||| | ||| Sbjct 6689 TTCTCCGAAGCGATGAGCTC 6708 >seq2489 Length=74189 Score = 100 bits (110), Expect = 4e-16 Identities = 262/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| ||||||||| | |||| || ||||||| ||| Sbjct 71769 GGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 71828 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||||||| | || || ||||| || || | ||||| | ||| ||| | Sbjct 71829 ATGCATG-CAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAGG-TGATTCACAAGC 71886 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | |||| || ||| | ||||| || || ||| | Sbjct 71887 TGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCA 71946 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || | ||||| || || || || ||| |||| || ||||| ||| | | || || Sbjct 71947 ACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGC-CAGTTCTACGTTGCCAACGGGGAA 72005 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || || ||||| ||| | ||||||||||| || || || || || |||||| Sbjct 72006 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 72065 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||| | || |||| || | || || || ||| | |||| Sbjct 72066 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 72125 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTA 70455 ||| | ||| || |||||||| |||||||| Sbjct 72126 TTCATCCACGTTATCGGCGACGCACACGTGTA 72157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740996293337160