Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2010 168 1e-37 seq1911 145 1e-30 >seq2010 Length=94791 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 72988 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 72929 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 72928 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 72869 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 72868 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 72809 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 72808 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 72749 Query 16672 CCG 16674 ||| Sbjct 72748 CCG 72746 >seq1911 Length=140580 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| |||||| || |||||||| || || |||||||| || ||| Sbjct 98940 GCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCCGCCATC 98999 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || | ||||||| |||| Sbjct 99000 CGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGACC 99059 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 99060 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGAG 99119 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || ||||||| | || || || | || ||||| ||| Sbjct 99120 CACGCCCGCCGTAAAACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGTCAGGGC 99179 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 99180 CGCACCCTTTACGGCTTCGG 99199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068990941163