Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4812 306 1e-77 seq2489 96.9 9e-15 >seq4812 Length=10756 Score = 306 bits (338), Expect = 1e-77 Identities = 1060/1639 (65%), Gaps = 55/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | ||| ||| |||||||| Sbjct 4076 TTCACGCACGCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCT 4135 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||| |||| || || || ||||| || | ||||| || ||| | Sbjct 4136 TGTTTCCTATTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAA 4195 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || ||| || || || ||||| || ||| | || ||||| | || || Sbjct 4196 TGCGCCTGTATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCC 4255 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | ||| || || | | |||||| | ||| Sbjct 4256 ACTAACAGCTACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGT 4315 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| |||||||| || |||| Sbjct 4316 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTC 4375 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| || ||||| | || ||||| || || || || || ||| Sbjct 4376 GCTATCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 4435 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||| || || || ||||| |||| | Sbjct 4436 CACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTC 4495 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| | || || || ||||| ||| Sbjct 4496 TTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCT 4555 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | || ||||| || |||||||| || ||| Sbjct 4556 GGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAA 4615 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || ||||||||||| ||| ||| |||| ||||| || ||| | || | ||| Sbjct 4616 GGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAG 4675 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| ||| |||| ||| | ||||| || | ||||||||||| || ||| Sbjct 4676 ATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAATCAG 4735 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| || | ||||| || | |||||| |||| ||| | || || ||||| | Sbjct 4736 CAGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCA 4795 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| ||| || || || ||| | ||||| | ||||| || |||||| || | Sbjct 4796 CCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGAAAAC 4855 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGT----AACCT-ATCATGCTACTTGCAATC 364381 ||| || ||| || || || ||||| || || | |||| || |||| | Sbjct 4856 GGTGTGTTCGACTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGC-----GCAACC 4910 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATG 364440 || ||||||| |||||| || |||||||| || | || || || | || || ||| Sbjct 4911 TCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG-TCCAACATG 4969 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 || ||||| || |||||| |||| || ||||| || || || | || || | | || Sbjct 4970 CGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAAC 5029 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || || || || | ||||||| | || ||| | ||||| || || || || Sbjct 5030 TACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTAC 5089 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||||| || ||| | ||| ||| | ||| || | | | |||| Sbjct 5090 TTTGCTGCCATGGAGACGTCG------ATGGAGATTGCCACGG---AATTGGGTCCTTAC 5140 Query 364621 GAGGGGTCCC----CTCTTTCGC-----AGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 ||| || || |||| || |||| | |||||||| || | ||| ||| Sbjct 5141 GAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTC 5200 Query 364672 ACGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 || | |||||| | |||||||||| | ||| |||| | || || ||| Sbjct 5201 ACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATTAAACACGGT 5260 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 || ||||| || | || |||||||| || || || || || |||||||| || Sbjct 5261 CTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGC 5320 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCG 364846 |||||||||| |||| || ||||| | ||| | || || || || | | | Sbjct 5321 AACAACGAGTCTATCGAGCC--TTACACGTCCAACATGTACAACCGTCGTGTGTTGGCTG 5378 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || || | ||||| ||||| || | ||||| ||| ||| | ||| | || Sbjct 5379 GTGAGTTCACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCATTTG-- 5436 Query 364907 GTGACAGCATGAAGAACTATATCA-----TCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || |||| || |||| | | | ||| || |||||||| || Sbjct 5437 --GAC-GCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAA-GGTCA 5492 Query 364962 AGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GA 365019 |||| |||| || ||| | ||| | ||||| || || ||||| || || || || Sbjct 5493 AGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGA 5549 Query 365020 A--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || | | || || |||| || || || |||| |||||| ||||| |||||||| | Sbjct 5550 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 5609 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || | ||| | | || || | ||||| || |||||||| || |||| |||| Sbjct 5610 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 5669 Query 365138 AATCCGGTCTTAAGACAGG 365156 | || || ||||| || Sbjct 5670 AGAAGGGACTCAAGACCGG 5688 >seq2489 Length=74189 Score = 96.9 bits (106), Expect = 9e-15 Identities = 346/532 (65%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 111359 CGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACT-TGCAGCAAAAA 111417 ||| || || |||||||||||| | ||| |||| ||| | ||| ||||||| ||| Sbjct 71639 CGAGGAGCTACTGTGGTTTATTAGTGGAGACACAAGTGCCCAC--ACTCTGCAGCAGAAA 71696 Query 111418 -ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC 111476 || | | |||||||| || |||||||| || || | ||| ||| || || Sbjct 71697 GATATTCATATTTGGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAG 71756 Query 111477 GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || | || || || ||||| |||||||| || || ||||| ||||||||||| Sbjct 71757 GATCGGGAGGTTGGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCC 71816 Query 111537 GACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTA-CAGAATGT 111595 | |||| |||||| | || | || || || || || |||| || Sbjct 71817 AAGTACACGGACATGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAG-GT 71875 Query 111596 CATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACC 111654 ||| | ||| | | || || || ||| || || ||| | || || ||||||| Sbjct 71876 GATTCA-CAAGCTGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACC 71934 Query 111655 CAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTAC 111714 | | | | | ||||| || || || || || | | |||||||| || || Sbjct 71935 CGGCCGATCTCAACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTG 71994 Query 111715 ACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTC 111774 | ||||| | || || || ||||| |||||||| || || || |||||||| || | Sbjct 71995 CCAACGGGGAATTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGC 72054 Query 111775 CGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCA 111834 | || || ||||| || ||||| || || || | | | || || | || || | Sbjct 72055 CTTTCAACATTGCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAA 72114 Query 111835 AACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 |||| || || ||||| ||||||||||| || || || || ||| ||||| Sbjct 72115 AACCTGGCGAGTTCATCCACGTTATCGGCGACGCACACGTGTACCTGAACCA 72166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303240195610562