Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3009 152 5e-32 seq4812 150 2e-31 seq4161 134 1e-26 seq2912 104 2e-17 >seq3009 Length=30629 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 11898 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 11957 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 11958 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12017 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||||||||||||| | || | | || | | ||| | | Sbjct 12018 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 12077 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 12078 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 12124 >seq4812 Length=10756 Score = 150 bits (166), Expect = 2e-31 Identities = 722/1124 (64%), Gaps = 48/1124 (4%) Strand=Plus/Minus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTG 145111 |||| || |||| | ||||| || |||||||||||||| |||| ||| |||||| Sbjct 5403 TACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTG 5344 Query 145112 AAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTAC 145171 | || || | ||||||||| ||||||||||| ||||| || | || || |||||| Sbjct 5343 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 5284 Query 145172 GCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAA 145231 || |||| | || || || || ||||| || ||| ||| || ||||| | |||| Sbjct 5283 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAG 5224 Query 145232 TCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 | ||| ||| || | || | ||| ||||||||||| |||| || || |||| ||| Sbjct 5223 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 5164 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCG 145346 || || ||| || || | |||| | ||||| | |||| | ||| || | || Sbjct 5163 GCCGGAGAGCCCTGGAACGTCTCGTAA-GGACCCAATTCCGTGGCAATCTC-CATCGACG 5106 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA--GCAGCATCGCTTC 145404 ||||| || | || || || |||||| || | | |||| | || | |||| Sbjct 5105 TCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGA--GCTTG 5048 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 ||||||| ||| | || || | || ||||| || || ||||| | || | Sbjct 5047 CGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAAT 4988 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGAT-ATCGATTAC 145523 || ||||| ||||| ||||||| | | | ||| | | ||||| || | | || Sbjct 4987 ACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGAC 4928 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAA 145583 |||||| | || || | ||| ||| | ||||| | | || | | Sbjct 4927 -GTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGT 4869 Query 145584 AGTCAAACCGAGCCTCGTCAACGACCACA--CAGCTATTGACGGCGATCGACGCCAAATT 145641 |||| ||| | | | || || | || | |||| || | |||||||| || Sbjct 4868 AGTCGAACACACCGTTTTCCACAAACATAGGCAGC--------GCCACAGACGCCAAGTT 4817 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || |||||| ||| || || | || |||| | | || ||| ||| || ||||| Sbjct 4816 GCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCTGG 4758 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | ||| || |||| || |||||||| || | ||| |||||||||||||||| Sbjct 4757 AACGGATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 4698 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 || | || | || ||||| | ||| | || | |||| ||| || | ||| || Sbjct 4697 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC--CACAGCTGCTGAGC 4640 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAAC 145876 | || | || || || | ||||| |||| | |||||| |||||| Sbjct 4639 GTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCT--TCAAAC 4582 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 | || |||| ||| |||| || ||| | ||||||||| | || ||| | Sbjct 4581 TCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 4522 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCG 145996 || ||||| | || | || ||| || | ||| ||||||||||||||||| | ||||||| Sbjct 4521 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 4462 Query 145997 C--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAG 146050 | |||| |||| |||| ||| ||| ||| || || || | ||| | Sbjct 4461 CGGGCGCGGTGCA--GCTCATTACCGTGGTT---CTTACGCAGATCCAGGA-ACTCGAAC 4408 Query 146051 ATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCC 146107 | ||| ||||||||||| || | |||| |||| | || || || || || ||| Sbjct 4407 ACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCC 4348 Query 146108 TGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||||||| | || || ||| |||||| || |||| |||||| Sbjct 4347 TGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGG 4304 >seq4161 Length=9822 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| || ||| Sbjct 9539 CCGCCACGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTC 9598 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 9599 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9658 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 9659 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 9718 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || ||||| |||||||| Sbjct 9719 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 9765 >seq2912 Length=37157 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 4509 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4568 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || |||||||| || ||||| |||||||||||||| | | Sbjct 4569 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4628 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || | || || || | Sbjct 4629 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 4688 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 4689 AGATCTGCATGA 4700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972732013440