Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4812 163 4e-35 seq4740 150 2e-31 >seq4812 Length=10756 Score = 163 bits (180), Expect = 4e-35 Identities = 716/1126 (64%), Gaps = 8/1126 (1%) Strand=Plus/Minus Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 5088 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 5029 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 5028 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4969 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4968 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4909 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62731 || | || || |||||||| || | |||| | | || || || | | Sbjct 4908 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4849 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 4848 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4789 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || | || | || ||| | || || | ||| || || || || || ||||| Sbjct 4788 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4729 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 4728 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4669 Query 62912 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTC 62969 |||| || || ||| | | || |||| || ||| | | | | || || || Sbjct 4668 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4611 Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 | ||||| | ||||| ||| ||||| || ||||| | || ||| |||||| Sbjct 4610 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 4551 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 4550 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 4491 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 4490 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 4431 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4430 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4371 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 4370 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4311 Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329 |||| || ||||| || || || | || || || || ||| ||||| | |||| | Sbjct 4310 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4251 Query 63330 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4250 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4193 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||| || || || |||||||| ||| |||||| ||| | ||| ||||| Sbjct 4192 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4133 Query 63448 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 ||||| || |||| || || || || || | ||||| | ||||| || || | Sbjct 4132 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4073 Query 63508 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63567 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 4072 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 4013 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 || || ||||||| | ||| ||||| || | || || | |||| Sbjct 4012 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3967 >seq4740 Length=106065 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 16530 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 16471 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 16470 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 16412 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TC 32833 || ||||| || || || || || | || | ||| || || ||| | || Sbjct 16411 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 16352 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 16351 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 16295 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | | ||||| || || || | || || | || || ||||| | || || Sbjct 16294 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 16235 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| |||||||| |||||||| || || || || |||||||| | |||||||| Sbjct 16234 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 16175 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 16174 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 16117 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 ||||| || || || | || || || || || | | |||| || || || || Sbjct 16116 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 16057 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 16056 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 15997 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 || || ||||| | ||| | || || | ||||| || || Sbjct 15996 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 15956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633578212563600