Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3280 205 2e-47 seq4740 123 5e-23 seq6276 109 1e-18 >seq3280 Length=26141 Score = 205 bits (226), Expect = 2e-47 Identities = 455/671 (68%), Gaps = 24/671 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| |||| || |||| ||||| | | | Sbjct 15342 GTGGGTACCCTTTCGGGTGGTTGGAAGATGAAACTGGAGCTGGCTCGTGCCATGTTGCAG 15401 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| |||| || ||||||||||| || |||||| |||| || ||||| ||| Sbjct 15402 AAGGCCGACATCCTGCTTCTTGATGAGCCCACGAACCACTTGGATGTCAAGAACGTTGCC 15461 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| ||| ||||| |||| || || |||||| Sbjct 15462 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTTACTTCCATCATGGTGTCGCACGAC 15521 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 ||||||||||| || |||||| | |||||||||||| ||| | || |||||| Sbjct 15522 TCTGGCTTCCTCGACAACGTGTGTACCAACATCATTCACTACGAGACCCGTAAGCTGAAG 15581 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| || ||||| || ||||||| || |||||||| ||| Sbjct 15582 ATCTACAAG------GGTAACCTCTCCAAGTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 15635 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || || || | | || ||||| ||||| ||||| || || || | Sbjct 15636 TACTACGAGCTCGAGTCGGAGAACGTCAAGTTCATCTTCCCCGAGCCTGGTTTCCTTGCT 15695 Query 280053 GGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 | |||| | | ||| || || | ||||| || | || | || || Sbjct 15696 GACATCAAGAACAAGGGTAAGC-CCATCATTCGTCTGACCAACTGTTCGTACCAGTACCC 15754 Query 280112 CAATGGCCCCAA--CATC-TTCAGCAGTGTCAACTCGCAGGT-TTCTAT---GAACTCAC 280164 || |||||| | || ||| || || || | || | || | || | | Sbjct 15755 GGGTGCCCCCAAGCCGTCGATCAACAACATC-TCTGTGACGTGTGCTCTTTCGAGC---C 15810 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | || | ||| | |||||||| ||||| ||||||||||| || ||||| | ||||| | Sbjct 15811 GTATCGCTGTGCTGGGACCCAACGGTGCCGGTAAGTCTACGCTGATCAAGATGCTGACGG 15870 Query 280225 GCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 | || || | || || |||| || |||||||| || |||||| | || ||| Sbjct 15871 GTGAAGTGGAGCCGAC-CAGTGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTAC 15929 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 ||||||||||||||||| |||||||| ||| ||||| || |||| | ||||| ||| Sbjct 15930 GTCGCTCAGCACGCTTTTCACCACATTGAGTCGCACCTTGATGAGACTGCCAACCAGTAC 15989 Query 280344 ATTCAGTGGCG 280354 || |||||||| Sbjct 15990 ATCCAGTGGCG 16000 >seq4740 Length=106065 Score = 123 bits (136), Expect = 5e-23 Identities = 541/848 (64%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| | |||||||| | ||||| |||| || ||||| | Sbjct 16797 TCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATCCAGTCAAAAGGGTTCTTA 16738 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| ||||| ||||| | || | ||||| ||||| ||||| | Sbjct 16737 GCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGGTCAGCCACGAACTCAATG 16678 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||||| ||||||| | ||| ||| | |||| | Sbjct 16677 TACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACAGGGAGC-GAGTCACGCAC 16619 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || || | || | | || || || | || | | || | | | ||| Sbjct 16618 AAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTGTACACGGCTCTCCGGCAG 16559 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| | ||||||| ||||||| || | | || | ||||| |||||||| || Sbjct 16558 CTTGGTGACCAGCTTGGAGTACAAAAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACG 16499 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||||||| |||||| || | | ||| || ||||| | || || ||| | ||||| || Sbjct 16498 ACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAA 16439 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | ||| || || || ||||| | | || || ||| | | || | ||||| Sbjct 16438 GATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAAGCCAGCAGGCG 16379 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAAGAACTTCT---GTGCCCATGCTGCCTTCTTTCC 252038 ||| | | || | ||| | || || ||||||| |||||||| Sbjct 16378 CTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGT 16319 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||| || || || ||| | |||| || | |||| |||||| ||| Sbjct 16318 GACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGAT 16259 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | || |||| || || ||||| | |||||| || ||| || || |||||| | Sbjct 16258 GTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAA 16199 Query 252159 AGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGTT 252218 ||||||| ||| || || | ||||| || ||||| | || | ||| Sbjct 16198 GCCATAGAAGCAACGAGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTT 16139 Query 252219 CTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACG 252278 ||| |||| || || || ||| |||| |||||| | || | | |||||||||||| || Sbjct 16138 CTCGTTCACGATACCGTCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCG 16079 Query 252279 CTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTC 252338 ||| | ||| |||||||| | |||||| | ||| || || | || || Sbjct 16078 CTCGTTGTCCGTGAGCTTG---CTCCAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTC 16022 Query 252339 CACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTACTTGA 252397 |||||||||| | || | | || ||||||||||| ||| |||| || | || | ||| Sbjct 16021 AGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGC-CACACTTC-GTGTTCCTGA 15964 Query 252398 TTGGGAAA 252405 |||| || Sbjct 15963 ATGGGGAA 15956 >seq6276 Length=26186 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||||| |||| || || || || |||| |||||||||||||||||| Sbjct 14035 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13976 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||||||||||| || || ||||| ||||||| || ||||| |||||||| || Sbjct 13975 AGTCTGCAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13916 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 | ||| ||| | |||||||| ||| | ||||| ||||||| || || Sbjct 13915 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGA 13866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027747368241231