Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4740 210 4e-49 seq4916 181 2e-40 seq3280 147 4e-30 seq3009 136 7e-27 seq4161 132 9e-26 seq2898 102 2e-16 >seq4740 Length=106065 Score = 210 bits (232), Expect = 4e-49 Identities = 586/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 ||||| ||||| |||||| || || |||||| ||||||| |||||| | ||| Sbjct 16830 ACGCCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGA 16771 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || || | ||||| ||||||| ||||||| ||| | ||||| ||| || Sbjct 16770 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGC 16711 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 | || | ||||||||||||||||| |||||||||| ||| ||| | |||||||| Sbjct 16710 GAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATA 16651 Query 10119 CCAATCATGCGGCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 ||||||| || || |||| | ||| | | || || | || | | || || || Sbjct 16650 CCAATCA-GCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC 16592 Query 10178 CTCGACGATGCTCTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGG 10235 | ||| ||| | |||| || || ||||||| | | ||||| || |||| Sbjct 16591 ACGAATGAT-CTCGTGTACACGGCTCTCCGG-CAGCTTGGTGACCAGCTTGGAGTACAAA 16534 Query 10236 AGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCC 10295 || | || | | ||| | ||||||||| || ||||||| |||||| || || | | Sbjct 16533 AGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTC 16474 Query 10296 AGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAAC 10355 |||||||||||||| || || || ||||| || |||| |||||| || || ||||| Sbjct 16473 AGACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAA- 16415 Query 10356 AGAAGA--CCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGC 10412 ||||| || ||||| ||| | | || | |||||||| | | ||||| | ||| Sbjct 16414 -GAAGATGCCTTCCACAGCAG-CGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGC 16357 Query 10413 GAAAAGTATTTC--GAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATA 10469 | | | | ||| ||||| |||||||| || |||||| ||||| || Sbjct 16356 GGGTCGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATG 16297 Query 10470 GCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAG 10529 || | ||| | || |||| || |||||| || | |||| |||||| ||| Sbjct 16296 GCACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAG 16237 Query 10530 TATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAG 10589 || ||| ||| | | ||||| || |||| | | ||||| ||| ||| | Sbjct 16236 TAGACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCG 16177 Query 10590 GGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTG 10649 || || ||||| | | ||||| || || |||||| |||| || || || ||| Sbjct 16176 GGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 16117 Query 10650 CCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCA 10709 |||| |||||| |||| | ||||||||||||||| ||||| | || | || || Sbjct 16116 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTT---G 16060 Query 10710 CGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACG 10769 | |||||| | || || || | || |||||| | |||||||| | ||| || Sbjct 16059 CTCCAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCG 16000 Query 10770 GCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || |||||||||||||| | | ||| | | | | ||||||||| Sbjct 15999 GCTTTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAAC 15955 >seq4916 Length=47189 Score = 181 bits (200), Expect = 2e-40 Identities = 401/588 (68%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGC-TCAGGAGACTGGAGCATTTTCCACATTGCTTC 268269 ||||| |||| ||| || ||||| || | | | ||| |||||| |||||| ||| Sbjct 40890 CCAGTGGCAACCACGAAATCCTCGGGAGTGTCGTG-CTGTAGCATTCGCCACATACATTC 40832 Query 268270 GACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCA 268329 || ||||| || || |||||||| ||||||| ||||| | ||| || | |||||||| Sbjct 40831 CACGTAGTCTCGAGCGTGGCCCCAGTCGCGCTGGGCGTCGAGGTTGCCTATAAACAGGCA 40772 Query 268330 TTTCTGCTTGCCGAGCTTCACG-CGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACG 268388 ||| | || ||| | | || | | | ||||||||||| || || || || | Sbjct 40771 GCTCTCGATTCC-AGCGTGAATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAG 40713 Query 268389 TCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCAT 268448 | || ||| |||| |||||||||||||| || || ||||| ||| |||| |||| Sbjct 40712 TTGGTCCGCGTCGAGGACTCTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCAT 40653 Query 268449 ATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAG 268508 | || || || | ||| || || |||| || ||||| |||||| || | || || | Sbjct 40652 AAGCTTCGCGATGGTTAACTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTG 40593 Query 268509 AACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGC 268567 ||||||||||||| || || || || | || || | || | ||||| ||| | | | Sbjct 40592 AACGTGGATGGAATGGTGT-GTTCTCATCCTGTGGTGTGGCTTGTACTTTACCATATAAC 40534 Query 268568 TCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCC 268627 ||| || || ||||||||||| | || | | ||||| || || |||| | || Sbjct 40533 TCGCTTGTAGACGCTTGGTAGAATCTCGTGGAATGCTCGAGGCCACATGTTCGCA-AGCT 40475 Query 268628 T-CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAA 268686 | ||||| || |||| || | | || || |||||||| || || | || ||||| Sbjct 40474 TGTGAGCAGGCGGAGAGCGCCTAAAGCGTCGACATCCGCTGTGTATTCGGCCAGTTCGAA 40415 Query 268687 TGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTG 268746 || || | || ||| | || |||||||| || || || || || || | Sbjct 40414 GGAGACTTTCACGTGGGACATTGCTCCCAGGTTGTACACTTCGTCTGGACGCACACGTGC 40355 Query 268747 CACGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 |||||||| ||| | || | ||| || ||||||||||||||||||| Sbjct 40354 CACGATCTGGCAC-AAATTGGATGAATCCGTGAGGTCTCCGTAGTGCA 40308 >seq3280 Length=26141 Score = 147 bits (162), Expect = 4e-30 Identities = 431/659 (65%), Gaps = 14/659 (2%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||||| ||| || ||||| |||||| ||||| ||||| Sbjct 16000 CGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGGTGCGACTCAATGTGGTGAAAAGCG 15941 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || ||||||||||| || | ||||| Sbjct 15940 TGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGACCACTGGTCGGC 15881 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | || || || || | |||||| ||||||| ||| || ||||| ||||| || | | Sbjct 15880 TCCACTTCACCCGTCAGCATCTTGATCAGCGTAGACTTACCGGCACCGTTGGGTCCCAGC 15821 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCACGTTGCTGAAGATCTCAGGG 225217 || | || ||| || | ||| | | ||| | |||| | | || ||| Sbjct 15820 ACAGCGATACGGCTCGAAAGAGCACACGTCACAGAGATGTTGTTGATCGACGGCTTGGGG 15761 Query 225218 CCAGTTTGGTAA-GCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGAAGT 225276 || |||| | | | || | ||| ||||||| ||||| | Sbjct 15760 GCACCCGGGTACTGGTACGAACA-GTTGGTCAGACGAATGATGGGCTTACCCTTGTTCTT 15702 Query 225277 AATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGG---TCACCGCGTCCTTCAG 225333 || | | ||||| || ||||||||||| ||||| || ||| || || Sbjct 15701 GATGTCAGCAAGGAAACCAGGCTCGGGGAAGATGAACTTGACGTTCTCCGACTCG---AG 15645 Query 225334 GTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTG 225393 |||||||| | ||||| || || ||||||| || ||||| || || Sbjct 15644 CTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCCACGAACTTGGAGAGGTTACCCTTGTA 15585 Query 225394 CTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAA 225453 || | ||||| || ||| |||| |||| || | ||||| ||| ||||| Sbjct 15584 GATCTTCAGCTTACGGGTCT---CGTAGTGAATGATGTTGGTACACACGTTGTCGAGGAA 15528 Query 225454 GCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGAT 225513 |||||||||||| ||||| |||||||| | ||||||| ||||| | | |||| | Sbjct 15527 GCCAGAGTCGTGCGACACCATGATGGAAGTAACGTTCGGCAGGCTCGTCAGGTAGTTCTC 15468 Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 ||||| || ||||| |||| |||| |||||| || || || || |||||||||||||| Sbjct 15467 CAGCCAGGCAACGTTCTTGACATCCAAGTGGTTCGTGGGCTCATCAAGAAGCAGGATGTC 15408 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 || | | ||||| || | || ||| ||||| ||||| || || || |||| Sbjct 15407 GGCCTTCTGCAACATGGCACGAGCCAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGG 15349 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| || ||||| ||| | || ||||| ||| ||| || | ||| || | Sbjct 16556 GAATTCGTTGTGGTGAGTAATCATGACGACACCACCGTTGAACTCCTTGATGGCCGAAGC 16497 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 ||| || |||||||| |||||||||||| ||||||| |||||||| || | | | ||| Sbjct 16496 AAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTG 16437 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 ||| | |||||| || || | | ||| | ||||||||||||||| || || || || Sbjct 16436 CGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTGACCACCGGACAGACC 16377 Query 224617 GCGGATCCGCGAGTGAGT 224634 || || |||||||| || Sbjct 16376 ACGCATGCGCGAGTGGGT 16359 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225778 GTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC-GGGGAAGCCCTCCAGCTGGC 225836 || ||| || ||| |||| ||| ||||| | || | |||||| ||||| ||||||| Sbjct 15206 GTTGTGCTCGACGAACACAGTCTTGAGCTCATC-GCGGCTGGGGAATCCCTCAAGCTGGC 15148 Query 225837 CATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGT 225896 | || | || ||||| | |||||| ||| || |||||||||||| || |||| Sbjct 15147 CGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACCGTTGGGACCGCACAGACCGT 15088 Query 225897 AATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGG 225956 || | | || ||||| | | || || | | |||||| || ||| | ||||| || | Sbjct 15087 AACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACCACCGTAAG 15028 Query 225957 CAAGGGAGAACTCGCAATCGCACAGGTC 225984 |||| ||||||||||| | ||||||||| Sbjct 15027 CAAGCGAGAACTCGCAGTTGCACAGGTC 15000 >seq3009 Length=30629 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || || ||||| || |||||||| || || || Sbjct 11898 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 11957 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 11958 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12017 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| ||||| || |||||| || ||| |||| | | || || Sbjct 12018 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 12077 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| || ||||| |||||||||||||| ||||||||| Sbjct 12078 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 12125 >seq4161 Length=9822 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || ||||| || || || |||| |||| ||| ||||| ||||| || |||||||| || Sbjct 9533 TAGTTTCCGCCACGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAG 9592 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || || | || || || | |||||| || ||||| || | | || ||||| Sbjct 9593 TCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCA 9652 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || |||||||||||||| || |||||| ||||||| ||||| | ||| | | Sbjct 9653 GGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGC 9712 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| ||||| || || || || | |||||| ||||| |||||||| Sbjct 9713 TCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 9765 >seq2898 Length=40630 Score = 102 bits (112), Expect = 2e-16 Identities = 202/294 (69%), Gaps = 10/294 (3%) Strand=Plus/Plus Query 176241 GTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGT 176300 ||||||||||| | || | ||| |||||| || || || || || | ||| ||||| Sbjct 14087 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 14146 Query 176301 CCG--CGAGGA-AGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCG 176357 || || | | || ||| | |||||| || |||||| |||| || ||||| | Sbjct 14147 CCTGACGGGTACAGTAGCGGC---AGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTG 14203 Query 176358 ACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTAT 176417 || || | || | || || || |||||||||||| | | || |||||| ||| Sbjct 14204 ACAATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAGGCTGTGTGCTCACTGCAGTAA 14263 Query 176418 CCGGCAAACTGCGCGACTTTGATTT--CTTGTACGAGGTTGCGCTTCAACGCCGAGAACA 176475 || || | ||| || || || | || || ||| || ||||| || || | ||||| Sbjct 14264 CCAGCCAGCTGAGCCACCTTCACTTCACTCGTA--AGCTTGCGTTTTAAACAAGCGAACA 14321 Query 176476 GAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCT 176529 ||| ||||||||||||| || ||||||||||| ||||| || | || |||| Sbjct 14322 GAACCTTCCGCTGCGAGATTTTGAGACCATCGACCACCGATGGCAGCGATCGCT 14375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921544165778520