Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4740 293 4e-74 seq4812 248 2e-60 >seq4740 Length=106065 Score = 293 bits (324), Expect = 4e-74 Identities = 578/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || |||| |||||| || |||||| | ||||| | | ||| Sbjct 15986 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGAC 16045 Query 42369 ---ACGGCCGGCTGGGAG-TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || | | | || |||| | | || ||| | ||| |||| || | || Sbjct 16046 CTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACAC----TTCATCAAGCACGTGCT 16101 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||| |||||| || || || |||||| |||||| | |||| || Sbjct 16102 CGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAA 16161 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| ||||| || |||||||| ||||||||||| ||||| |||||| | Sbjct 16162 CGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 16221 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| ||| | |||||||| ||||||||||| ||| | ||||| Sbjct 16222 TCACTCGGAGGTCTACTC---ACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA 16278 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || || | ||||| ||||| || || || ||| ||||||||| ||||||| Sbjct 16279 GGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGC 16338 Query 42662 GCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGC---GAGAGGCTGGTAGCCTTTA 42717 ||||| ||| ||| |||| | | | | | | ||| | ||| | || || Sbjct 16339 ACTCAAGTGGTGCGA----CCCGCGTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCG 16394 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 | || || || |||||||||||||||||| | ||| ||||||||| ||||| ||| || Sbjct 16395 CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGC 16454 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||| || | |||||||||||| |||||||| | |||||||| || Sbjct 16455 GCGGCCTC-ATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATG 16513 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||| |||||||| ||| ||| | | ||| ||||| || || Sbjct 16514 CACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCA---CCAAGCTGCCGGAGAGC 16570 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | | ||||| || || |||| ||| ||| | ||||| | | ||| Sbjct 16571 CGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCG 16630 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || ||| ||| | || |||||| | |||||||||| ||||||| ||| ||| Sbjct 16631 CTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTG 16690 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 || |||| ||| || | | | | ||| | | ||||| || | | ||| || Sbjct 16691 GCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTT 16750 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | ||||| | | |||||||||||||||||||||||||| || | | Sbjct 16751 GACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGC 16810 Query 43137 GACTAC 43142 || ||| Sbjct 16811 GAGTAC 16816 >seq4812 Length=10756 Score = 248 bits (274), Expect = 2e-60 Identities = 910/1408 (65%), Gaps = 48/1408 (3%) Strand=Plus/Minus Query 244070 AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 ||| ||| | ||| | | |||| || | | ||||| || | || ||| || || | | Sbjct 5418 AGCTCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTG 5359 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 || | |||| || |||||||| ||| |||||||||| ||||| |||||| Sbjct 5358 TACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAG 5299 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249 || ||||||||||| | |||||||| ||| | | ||||| | || | | Sbjct 5298 GCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCT 5239 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 | || || ||||| ||| | |||| ||| | || ||| |||||||||||| Sbjct 5238 TTTAGTGCGGCCCAGTTCCAAA-GCCC-AGATGAAG----GTGTGACGCCCCACATGTCG 5185 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 ||||| | | ||||| ||| | || ||||| | | ||| ||| ||||| | Sbjct 5184 AACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCC 5125 Query 244370 TGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 ||| | || || | | || | ||| || ||||||| ||||||||||| |||| Sbjct 5124 GTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTT 5066 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGT-GAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 ||||| || || || |||| | | ||| | | | ||| | ||||| | || | Sbjct 5065 GTTCAATTCACGAGC-TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCG 5007 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTT 244544 |||| ||||| ||||| || || ||||| | || ||| ||||||| | || || | Sbjct 5006 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGA---CTTGCGAGCCT 4950 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 | | || || ||| ||||| ||||||| ||||||||||||||||| ||||||| || Sbjct 4949 CTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGA 4890 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCA 244664 | || || ||| || ||||| || | || || ||| | Sbjct 4889 CCACCTCATACAGTCTCTTGTAGTCGAACACA-------CC---------GTTTTCC--A 4848 Query 244665 CAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGT 244724 ||||| || || || |||| |||||| || |||||||| || | |||| Sbjct 4847 CAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGT 4788 Query 244725 ACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGG 244784 ||| | | ||| ||| | ||| ||| | ||| || |||| || ||| ||||| | Sbjct 4787 ACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTCG 4728 Query 244785 ACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGA 244844 ||||| ||| |||||||||||||||||||||||| | || ||||| | ||| ||| Sbjct 4727 ACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGT 4668 Query 244845 CGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT 244904 | |||| | ||| || | | ||| |||| ||| | || || || || || Sbjct 4667 CTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCT 4608 Query 244905 CGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACG 244964 |||| ||||| || || ||||| ||||||| ||||| || || || | Sbjct 4607 CGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACC-AGGAGCT 4549 Query 244965 ACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || ||| || | | |||||||| ||| | ||| || |||| ||||||||| || Sbjct 4548 TCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCA 4489 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 || | ||| || || | || | ||| | || | ||| || || |||||| Sbjct 4488 GGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTA 4429 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | ||| |||| || || || |||||| ||||||| ||||||| ||||| ||||| | | Sbjct 4428 CGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAG 4369 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCG 245199 || ||||| || |||||||||| | | ||||| |||| || | || Sbjct 4368 CCCTTGCGCTTACCTCCGCCCTGGTCCA----CATAGCGAGCCGTGTCGTTAAACACACG 4313 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC 245259 || | || | |||||||||||| |||||| ||||| ||||||| | || | Sbjct 4312 CAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGC 4253 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | || |||| || || || | ||||| || || ||||| |||||| Sbjct 4252 GCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4193 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||| | |||||| |||||||| || ||| || ||| | || || || || Sbjct 4192 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4133 Query 245380 GGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 |||| ||| || | ||| | ||| | |||||| ||||| ||| ||||||| || ||| Sbjct 4132 AGACAACTGAGGACGTGGCG-TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAG- 4075 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCT 245465 | | || ||| | || | ||||||||| Sbjct 4074 AACTTCTGCGACATGAGCTCGTACGTCT 4047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944259037406160