Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3280 122 2e-22 seq2898 98.7 2e-15 >seq3280 Length=26141 Score = 122 bits (134), Expect = 2e-22 Identities = 443/686 (65%), Gaps = 13/686 (2%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 16025 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 15966 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||| ||||| ||||| || ||||| || | |||||| || || Sbjct 15965 GTGCGACTCAATGTGGTGAAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 15906 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| || ||||| |||| ||| || || || Sbjct 15905 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 15846 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCG-ATACCTGGGCAT 333552 || || ||||| || || | |||| | || | | || | | || | || Sbjct 15845 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGTCA-CAG 15787 Query 333553 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 333611 | ||||| | | || | |||||| |||| | || ||| || || Sbjct 15786 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTACGA-ACAGTTGGTCAGA 15728 Query 333612 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 333671 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 15727 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 15668 Query 333672 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 333728 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 15667 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 15611 Query 333729 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 333788 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 15610 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 15554 Query 333789 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 333848 || ||| || || ||||||||| || |||||||| ||||| || | | | | |||| Sbjct 15553 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTAACG 15494 Query 333849 TCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTG 333908 | | ||| | ||||||| | |||||| ||||| ||| | ||||| Sbjct 15493 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 15434 Query 333909 GTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 333968 || ||||| |||||||| || | | || ||| | | ||| ||||| || || | ||| Sbjct 15433 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 15374 Query 333969 TTCATTTTCCACCCTCCTGAAAGAGT 333994 ||||| ||||| || || ||||| || Sbjct 15373 TTCATCTTCCAACCACCCGAAAGGGT 15348 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| ||||| || || |||||||| || || ||||| || Sbjct 15167 GGGGAATCCCTCAAGCTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACC 15108 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 15107 GTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAG 15048 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||||| | ||||| || || || || || || || | ||||| || Sbjct 15047 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 15000 >seq2898 Length=40630 Score = 98.7 bits (108), Expect = 2e-15 Identities = 292/443 (66%), Gaps = 12/443 (3%) Strand=Plus/Plus Query 297278 GACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACA 297337 |||||||| ||||||||||| || |||||||| || | ||||||||| |||||| Sbjct 13928 GACCAACCCGTACCGATTCCTTCCGCCCCATTCACAAGCAACATCGGAATAATAGGCACG 13987 Query 297338 TAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCC 297397 || ||| |||| || | | || || || | || | || ||||| Sbjct 13988 TAGTACACTGGCTCAACAGGGAAGCCATCGTCGTCGGCGTAGCGTAACAGCGCGTCGTCT 14047 Query 297398 GTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTC 297457 ||| ||| ||| ||||| || | |||| ||||| |||||||| | ||| Sbjct 14048 TCTTCGGGGAATACCAAGCGAGTGTGCTTCTGCAGTAACGTGAAGATATATCGAGGACTA 14107 Query 297458 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG 297517 || ||||||||||| |||| || | ||| || || || ||| ||| || | Sbjct 14108 GCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGACCTGACGGGTACAGT-AGCGG 14166 Query 297518 -ATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 297576 | ||||||| || || | ||||| || | ||| || || ||| || | || || Sbjct 14167 CAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGTAACGAGGC 14226 Query 297577 TTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACCTTC 297634 ||| || ||||||||||| | |||| ||||| |||||| | ||| || |||||| Sbjct 14227 TTCTCCGTGGTGATAGGCTGTGTGCTCACTGCA--GTAACCAGCCAGCTGAGCCACCTTC 14284 Query 297635 ACGTCGGTCGTCAAATTGCGCTTGA---AAGCTGAATATATCACTTTCCGTTGAGAAGGT 297691 || || |||| | ||||| || | |||| ||| | | || ||||| || || | Sbjct 14285 ACTTCACTCGTAAGCTTGCGTTTTAAACAAGC-GAACAGA--ACCTTCCGCTGCGAGATT 14341 Query 297692 TTGAAACCATCAACGACCGACGG 297714 |||| |||||| || ||||| || Sbjct 14342 TTGAGACCATCGACCACCGATGG 14364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102784038755850