Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4812 239 5e-58 seq4740 161 1e-34 seq2898 95.1 1e-14 >seq4812 Length=10756 Score = 239 bits (264), Expect = 5e-58 Identities = 1086/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 5698 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 5639 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 113715 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 5638 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 5584 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| ||||| || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 5583 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 5525 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 5524 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 5465 Query 113836 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 5464 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5407 Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 5406 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5347 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 5346 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5287 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGGGCG 114070 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 5286 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 5230 Query 114071 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 5229 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 5175 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGC--CAA 114180 |||| | ||| || || |||| || |||||||| || ||| | |||| ||| Sbjct 5174 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 5118 Query 114181 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 5117 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 5058 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 114297 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 5057 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 5000 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGG 114356 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 4999 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 4941 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 4940 GATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 4881 Query 114417 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 4880 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 4828 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 ||||||| || ||||| | |||||| |||||||| || | ||| || Sbjct 4827 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 4768 Query 114536 AAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || || |||| || || |||||||||| ||||| ||||| |||| || Sbjct 4767 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCG 4711 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 4710 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 4652 Query 114653 ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGA 114710 || | || | | | || | | || | | || |||| |||||||||| || | Sbjct 4651 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 4593 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 | ||||||||||| || ||| | ||| | || || || || | | || ||||| | Sbjct 4592 GAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 4533 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | ||| | ||| |||| || | |||||||||||| || || | ||| || || Sbjct 4532 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 4473 Query 114831 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 114889 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 4472 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 4414 Query 114890 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 114946 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 4413 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 4354 Query 114947 CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCA 115006 || |||||| ||||| | || ||| | ||||| || || | ||| || || || || Sbjct 4353 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 4294 Query 115007 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGC 115066 | ||| ||| || || || || || ||| |||| | || | || || Sbjct 4293 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 4234 Query 115067 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 115126 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 4233 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 4174 Query 115127 CCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGT 115186 || || || |||||| ||| | || | ||||| || |||| || || | ||| Sbjct 4173 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGC 4114 Query 115187 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 115245 || || ||||||||||| || || || ||||| |||| | || | || ||||| || Sbjct 4113 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 4055 Query 115246 GTAGGTCTCCA 115256 ||| ||||||| Sbjct 4054 GTACGTCTCCA 4044 >seq4740 Length=106065 Score = 161 bits (178), Expect = 1e-34 Identities = 396/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | | ||| | Sbjct 16822 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 16763 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 16762 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 16703 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 16702 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 16643 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | ||| | | |||||| |||| || || || | || Sbjct 16642 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 16584 Query 125991 TGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC---- 126045 | |||| | | | || ||| | | | | || |||| |||| | | Sbjct 16583 TCTCGTGTACACGGCTCTCCGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 16530 Query 126046 -GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 ||| || || ||| | ||||||||||| |||||| || |||||||||| ||| | Sbjct 16529 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 16470 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | ||| || || | || || || ||||||||||||| Sbjct 16469 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 16410 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCA 126223 | || |||||| ||||| || | || ||||| | ||||| | || | ||| Sbjct 16409 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 16351 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 16350 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 16291 Query 126284 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 16290 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 16244 >seq2898 Length=40630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 172778 GCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 172837 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 15026 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 15085 Query 172838 ACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 172889 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15086 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 15137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597302892146280