Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4812 221 1e-52 seq4740 179 5e-40 seq2898 86.0 8e-12 >seq4812 Length=10756 Score = 221 bits (244), Expect = 1e-52 Identities = 1083/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 5698 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 5639 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 115676 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 5638 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 5584 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 ||| || || || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 5583 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 5525 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 5524 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 5465 Query 115797 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 5464 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5407 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || | ||| || || | |||||||| || | || | || ||||||| | Sbjct 5406 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5347 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 5346 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5287 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CGT--TCCTTGAGGGCG 116031 ||||| | || || ||| |||||||| ||||| ||| || || || ||| Sbjct 5286 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 5230 Query 116032 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 5229 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 5175 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 116141 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 5174 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 5118 Query 116142 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 5117 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 5058 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 | || | | || |||||| | || | || || ||||||| ||||| Sbjct 5057 CACGAGCTTGCGGGCTCTCGAACGCGT-AGTTCATGAGGATGAACGCATCCGCCAGACCC 4999 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGGG 116318 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | || Sbjct 4998 TGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAGG 4940 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 |||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 4939 ATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATA 4880 Query 116379 AAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 116437 || | | ||| || || || || | ||| ||| || |||| || || | | Sbjct 4879 CAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACAG 4827 Query 116438 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 116497 |||||| || ||||| | |||||| |||||||| || | ||| || | Sbjct 4826 ACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATA 4767 Query 116498 AATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | || |||| || || |||||||||| ||||| ||||| |||| || | Sbjct 4766 AGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGT 4710 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 4709 CCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA-- 4652 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | || | | | || | | || | | || |||| |||||||||| || || Sbjct 4651 CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAG 4592 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 || |||||||| || ||| |||| ||| | || || || || | | |||||||| | Sbjct 4591 AGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 4533 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 4532 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 4473 Query 116792 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 4472 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 4414 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || ||||||||||| |||| ||| | |||| || |||||||| || Sbjct 4413 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 4354 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| ||||||| || || | ||| || || || || Sbjct 4353 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 4294 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | ||| ||| || || || || || || |||| | || | ||| || Sbjct 4293 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 4234 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 4233 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 4174 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || |||||| ||| | || | ||||| || |||| || || | ||| Sbjct 4173 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGC 4114 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || ||||||||||| || || || ||||| |||| | || | || ||||| || Sbjct 4113 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 4055 Query 117207 GTAGGTCTCCA 117217 ||| ||||||| Sbjct 4054 GTACGTCTCCA 4044 >seq4740 Length=106065 Score = 179 bits (198), Expect = 5e-40 Identities = 400/588 (68%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| ||||| || | ||| ||| | Sbjct 16822 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 16763 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 16762 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 16703 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 16702 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 16643 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | ||| | | |||||| ||||||| || || | || Sbjct 16642 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 16584 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-- 127520 | |||| | | | | || ||| | | | | || |||| |||| | | || Sbjct 16583 TCTCGTGTACACGGCTCTCCGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 16530 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 | || || ||| | ||||||||||| |||||| || |||||||||| ||||| Sbjct 16529 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 16470 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | |||||||| || |||||||| | ||| || || | || || ||||| |||||||||| Sbjct 16469 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 16410 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA 127696 | || |||||| ||||| || | || ||||| | ||||| | || | || Sbjct 16409 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 16351 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 16350 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 16291 Query 127757 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 16290 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 16244 >seq2898 Length=40630 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 176798 GCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCA 176857 || || || |||||| | || || || |||||||| |||||||| || || || ||| Sbjct 15026 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 15085 Query 176858 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 176909 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15086 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 15137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613455120907560