Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4740 259 5e-64 seq3009 152 5e-32 seq2912 122 9e-23 seq4161 120 3e-22 >seq4740 Length=106065 Score = 259 bits (286), Expect = 5e-64 Identities = 425/604 (70%), Gaps = 8/604 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| ||||||||| | ||||| ||||| ||| ||| Sbjct 16531 GCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAG 16472 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||||||||| || || |||||||| |||| | |||| |||||| ||||| Sbjct 16471 ACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAA 16412 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG- 133072 || ||| || || || |||||||||| ||||||||| | | | || | | || || Sbjct 16411 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACAC-GCGGGT 16353 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 || ||| || ||||| | ||||| | |||| || || || || || ||||| Sbjct 16352 CGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCAC 16293 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | | || ||||| || | | ||| ||||| ||||| || || | Sbjct 16292 GCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGA 16233 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 |||||||| | |||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 16232 CCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCA 16173 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 |||||||||| | ||| | | ||| || ||||| ||||| ||||| ||||| | Sbjct 16172 CCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTG 16113 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC--GCTCCCA 133370 |||| ||||| ||||||||||||||||| || ||||||||||| | ||| ||| ||| Sbjct 16112 CGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGT-GAGCTTGCT-CCA 16055 Query 133371 GTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||| | | | | || || ||||| | |||||| | ||||| || || |||||||||| Sbjct 16054 GTC-CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 15996 Query 133430 TTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGT 133489 | |||||||| ||||| || | || ||||| || | ||| || ||| ||||| Sbjct 15995 TCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGT 15936 Query 133490 TTTC 133493 | || Sbjct 15935 TCTC 15932 >seq3009 Length=30629 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 12127 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 12068 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||||| | | | | || | ||||| | ||||| |||||||| |||||| || Sbjct 12067 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAAT-CCCGCCTGA 12009 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||| Sbjct 12008 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTA 11949 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| ||||| ||||||||||| || | || || Sbjct 11948 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 11898 >seq2912 Length=37157 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| |||||||| ||||||| ||| | | Sbjct 4698 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 4639 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| |||||||| |||||| ||||| Sbjct 4638 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAAT-CCCGCCTGACCA 4580 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 4579 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 4520 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 4519 CATCCAGAAGG 4509 >seq4161 Length=9822 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | ||||| ||| | | Sbjct 9765 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 9706 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| || || || |||||| |||| Sbjct 9705 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 9648 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 9647 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACA 9588 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | ||||| || ||||||||||| || | ||||| Sbjct 9587 ACATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGTGGCGG 9539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500130341581440