Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5142 470 2e-127 seq1778 221 2e-52 seq6031 122 1e-22 seq4812 98.7 1e-15 >seq5142 Length=16717 Score = 470 bits (520), Expect = 2e-127 Identities = 1067/1587 (67%), Gaps = 27/1587 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||| || || ||||| || || || |||||| || || || | ||| Sbjct 12147 TTCATCTTGGTCCTTGTACTTCTCGGCGTCGGCGACCATGCGGTCGATCTCGGACTGCGA 12088 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | || || ||||| ||||| ||||| ||||| | || |||| | ||| || | Sbjct 12087 CAGTCGACCTTTATCGTTCGTGATCGTGATCTTGTTCTCCTTGCCCGTCGACTTCTCCAC 12028 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| ||||||||||| || || ||||||| |||||| | || | ||| || || Sbjct 12027 AGCCGACACATTCAAAATGCCGTTGACATCAACGTCGAACGTCACGTCAATCTGAGGCAC 11968 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | ||| || || ||||| | | || | || || | | |||||| Sbjct 11967 ACCGCGCGGCATGGGCGGGATACCGTCCAGGTTGAACTTGCCCAGAAGATGGTTATCACG 11908 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 || | | | ||||| || || | |||| || ||| | || || ||||| ||| Sbjct 11907 CGTCATGGTTCGTTCGCCCTCGAACACTTGGATCAGCACGCCCGGCTGGTTATCA-GTGT 11849 Query 6868 -CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 ||| ||||| | || ||||| | || | ||| || || | ||||| | | || Sbjct 11848 ACGTCGAGAACGTCTGCGTCTTCTTCGCAGGCACCGTAGTGTTGCGTGGAATGAGCTTGG 11789 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||||| ||||| || || | || | ||||| |||| ||||||| |||| || Sbjct 11788 TCATAACTCCACCGGCCGTCTCCAAACCCAACGACAGCGGTGCGACGTCCAGCAGTAGCA 11729 Query 6987 GGTCTTGAACAGATT---CGTTCCCT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||||| ||| || || | || | || | | || || || || ||||| || Sbjct 11728 GGTCTTG--CAGCTTGGACGATGACTCATTGCCACTCAGTATCGCCGCCTGCACCGTGGC 11671 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| ||||| || || || ||||| |||| || ||| || || ||||| || | Sbjct 11670 GCCGTACGCGACGGCTTCGTCCGGGTTGATCGACTTGAACAGATCCTTGCCGTTGAAGAA 11611 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 | || | || ||| || | |||||||| || || ||||| ||||||| ||||| || Sbjct 11610 ACCCATCAGCAATTGCTGCACCTTCGGGATGCGCGTAGATCCGCCGACCAGGACGATCTC 11551 Query 7162 ATTCACTTTCGATTTATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 | ||| | | || | || ||||||||| || | | |||| || ||||| Sbjct 11550 GTCCACCT--GGTTCTTGGACAGCTTTGAGTCACGCAAAACCTGCGCGACCGGCTCCATC 11493 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 || ||||| |||| ||||| ||||| |||||||| || || |||| | | | Sbjct 11492 GTCTTGCGGAAGTAGTCGGCGCACAGGTCCTCGAAACGTGCGCGCGTGATGGTCGAGTTG 11433 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | || || || ||| ||||| |||| | | || |||| | ||| ||| Sbjct 11432 AAATCGATACCATCCAGTAGCGAGTCAATCTCAAGGTACGCCTGCGCCGAAGTAGACAAC 11373 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| ||||| || |||||||| || | ||||| || |||||| |||| | | Sbjct 11372 GTCCGCTTGGCGCGTTCGCACGCCGTACGCAGGCGACGCAGCGCACGCTGGTTCACTGTC 11313 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATC 7458 ||||| || | || || || || || | ||| | |||| || | || Sbjct 11312 ATATCCTTGCGGTACTTGCGCTTGAATTCCTGTACGAAATACTCGACC-AGACGGTTGTC 11254 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || ||||| |||||||| || || ||||| ||||| ||||| || ||||| ||| | Sbjct 11253 GAAGTCCTCACCTCCCAAGTGCGTGTCACCCGCTGTCGCCTTGACCTCGAAGATGCCTTC 11194 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | || || ||||| ||||| || || || || || || || || ||||| Sbjct 11193 TTCAATAGTGAGCAGAGAGACATCGAACGTTCCGCCGCCGAGATCGAAGATCAGCACGTT 11134 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || | |||| ||| || || || || ||||| || || ||||| || || || Sbjct 11133 GTGCTCACCTCCTTT---CTTGTCCAGCCCATAGGCGATCGCAGCGGCCGTCGGCTCGTT 11077 Query 7639 AATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 || ||||| || ||| |||| |||||||||| | |||||||||| |||||||| || | Sbjct 11076 GATGATACGCAGCACA-TTCAAACCAGCAATAGCTCCCGCATCTTTAGTCGCTTGGCGCT 11018 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 |||| ||||| ||||||||||||||||| || ||||||| | | || | || || | Sbjct 11017 GCGAGTCGTTGAAGTAGGCCGGGACCGTCACCACCGCGTTCTTCACATGTTTGCCAATGA 10958 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || || | ||| ||| ||| | | ||||| || |||||||| || | | Sbjct 10957 ATGCCTCGGCCACCTCTCGCATCTTGATCAACACCATAGACGAAATCTCCTCCGGTTGGA 10898 Query 7818 ACTGTTTCGTTTCACCGTTAAAAT-CAACTTCAATCATG-GGTTTATCCGCAGCACCGGG 7875 || |||| || || || || | || | || | || ||||| | | ||||||| | Sbjct 10897 ACGTCTTCGACTCGCCCTTGAACTGCACCACCAGT--TGAGGTTTGTTCTCAGCACCACG 10840 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | ||||| ||| ||| | || || || || || | | | || | ||||| | Sbjct 10839 AACTACCTTGAACGGCCAGTGCTTGATGTCCGACTGCACTTCTGGATCGGTGAACTTGCG 10780 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| | ||||| ||||||| || ||||| | | |||||| || |||||||| Sbjct 10779 CCCGATCAACCGCTTGACATCAAACACCGTGTTGTGTGCGTTCATAGCCACCTGGTTCTT 10720 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || ||||||||||| || | || || ||||| |||||||| |||||||| Sbjct 10719 GGCAGCATCGCCGATAAGACGCTC---CGTGTCGGTGAACGCCACGTACGACGGGGTCGT 10663 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || || || || ||||||||||| ||||| ||||| || || Sbjct 10662 GCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCCACACA 10603 Query 8116 CGAATACGTTGTTCCTAAATCAATACC 8142 ||| || || || || | |||||| || Sbjct 10602 CGAGTAAGTCGTGCCCAGATCAATGCC 10576 >seq1778 Length=4531 Score = 221 bits (244), Expect = 2e-52 Identities = 354/508 (70%), Gaps = 3/508 (1%) Strand=Plus/Minus Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||||||||| || ||| || || || || | | || || || || || || || Sbjct 4531 TTAATAATACGCAGCACGTTGAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGGCGC 4472 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| ||||||||||| ||||| | ||| |||| | |||| | ||| |||| Sbjct 4471 TGTGAGTCGTTGAAGTAGGCCGGCACCGTGATGACGGCGTTCTTGACCTCCTTGCCGATG 4412 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 | | || || | || ||| ||| | || ||||| || || |||||||| | | Sbjct 4411 AAGGCCTCGGCCACCTCGCGCATCTTGATCAGCACCATAGACGAGATCTCTTCGGGCTGG 4352 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||| || | ||||| || || | || ||| || || || | | ||||| Sbjct 4351 AACGTCTTGCTCTCACCCTTGAACTGCACCGTGATCTGCGGCTTGTCACCGGGACCGGAC 4292 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| ||| ||| | || || ||| | || || | ||||||| ||||| | Sbjct 4291 GTGATCTTGAACGGCCAGTGCTTGATGTCGGCCTGCACGATTGGGTCCGAGAACTTGCGG 4232 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||| || || || || ||||| | | ||||||||| |||||||| Sbjct 4231 CCGATCAGACGCTTGGCGTCGAACACCGTGTTGTGCGCGTTCATGGCAACCTGGTTCTTA 4172 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| || || || | | || ||||| |||||||| |||||||| Sbjct 4171 GCAGCGTCACCGATGAGGCGCTCCGAGTCT---GTGAACGCCACGTACGACGGGGTCGTG 4115 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| || || || || ||||||||||| ||||| |||||||||||| Sbjct 4114 CGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCAC 4055 Query 8117 GAATACGTTGTTCCTAAATCAATACCGA 8144 || || || || || | |||||| |||| Sbjct 4054 GAGTAGGTCGTGCCGAGATCAATGCCGA 4027 >seq6031 Length=37221 Score = 122 bits (134), Expect = 1e-22 Identities = 234/343 (68%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || ||||| || | | || || || ||||| ||||| || || | ||| Sbjct 18093 ATCGAAGTCCTCACCGCCAAGCAGCGTGTCACCGTTGGTCGACTTGACCTCGAACACACC 18152 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | | ||| ||||| || ||||| ||||||||||| || | | Sbjct 18153 GCCCGAGATCTCCAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAACACAGCGAT 18212 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || ||||| | |||| | || ||||| || | ||| || ||||| || || Sbjct 18213 GACCTTACCGTCGGCCTTGTCCATA------CCGTAGGCCAGAGCAGCAGCCGTAGGCTC 18266 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| || || ||| || ||||| | | || || || || || || || Sbjct 18267 GTTGATAATACGGAGCACGTCCAGACCGGCAATCTTACCGGCGTCCTTGGTAGCCTGACG 18326 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA- 7754 ||||| ||||| ||||||||||||||||| ||||| || | || || ||| |||| Sbjct 18327 CTGCGAGTCGTTGAAGTAGGCCGGGACCGTCACGACGGCCTGGGTCACAGGCTTGCCGAG 18386 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 || || | || ||| | || ||||| || || || ||||| || Sbjct 18387 GAAACCA-TCGGCGGTCTCCTTCATCTTAGTCAGCACCATGGA 18428 >seq4812 Length=10756 Score = 98.7 bits (108), Expect = 1e-15 Identities = 348/538 (65%), Gaps = 7/538 (1%) Strand=Plus/Minus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTA-CACGTCTGAAAGACCCTTTGC 105521 ||||| || || || ||| |||||||||| | || | ||| || | ||||| || Sbjct 4608 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGC 4550 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 | | ||||| ||||| ||| || |||| || || || | |||||||| | ||| Sbjct 4549 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4490 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGA-CACCTCGCCTCTTCATCACCTTGATTCA 105640 || | ||||| || |||| | ||| || | | || || ||| ||| || ||| Sbjct 4489 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCT 4431 Query 105641 AACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG 105700 ||| | || || || |||| | ||||||||||| || || || |||| || | | Sbjct 4430 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4371 Query 105701 ACCCTTTACG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 | || || || || || | || | ||||| | || || |||| |||| || | Sbjct 4370 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4311 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 |||| || ||||| || | || | || || || || || || | ||| | || | Sbjct 4310 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4251 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877 | | | ||| | | || ||||| || ||||| ||| ||||| || || | | Sbjct 4250 GGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCT 4191 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 ||| || |||||||| || || ||| || |||| | || | |||||||| || | Sbjct 4190 TTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAG 4131 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 ||| || || | || || || || ||||| ||||| || || || || |||| || Sbjct 4130 ACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078885164440