Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4812 250 3e-61 seq2460 152 6e-32 seq1689 123 3e-23 seq4740 102 1e-16 seq6276 87.8 2e-12 >seq4812 Length=10756 Score = 250 bits (276), Expect = 3e-61 Identities = 1085/1691 (64%), Gaps = 54/1691 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | || || Sbjct 5697 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTA 5638 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG-AATCGACC 109532 | ||||| | || | ||||| ||||||| ||| ||| || || || Sbjct 5637 CTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCG-CC 5579 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||| ||||||| || ||| | | | ||| || | || ||||| || ||||||||| Sbjct 5578 ACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 5519 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | ||| | |||||| ||||||||| || || || | ||||||||| | |||| || Sbjct 5518 CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAAT 5459 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 ||| | || || ||| | |||| || | || || | | |||| ||| Sbjct 5458 CTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTT 5399 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 ||| || | || |||||||| | || ||| ||| ||||| | |||||| || Sbjct 5398 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 5339 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 |||| | |||| |||||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 5338 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 5279 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA 109892 || || ||| |||||||| | | | || || | |||| |||| | | Sbjct 5278 CAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGTTCCA 5219 Query 109893 ACGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | | ||| || || | | || ||||||| || || | | ||||| | | Sbjct 5218 AAGCCCAG---ATGAAGGTGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTACTGG 5163 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | ||||| |||| ||| ||||||| | ||| || ||| | ||| || | || Sbjct 5162 CCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATCGACGTCT 5103 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATAT----GAGCA-TTCATGAG---GCGAGA 110063 | | || ||| || || ||||| || || | | || |||| ||| ||| | Sbjct 5102 CCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGG- 5044 Query 110064 CTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 |||| |||| | | || || | || | ||| ||||||| |||||||| || | Sbjct 5043 CTCT-------CGAACGCGTAGTTCATGAGGA-TGAACGCATCCGCCAGACCCTGGACGC 4992 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 | | ||||||||| ||||| |||||| || ||||| | | || || ||| ||| Sbjct 4991 CAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGT 4932 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 || |||||||||| ||||| || ||| | ||| | |||| ||| | | Sbjct 4931 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4872 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAAGA 110301 ||| |||||| | || | || ||| | | || || || | |||||| | Sbjct 4871 TGTAGTCGAACA-------CACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAG 4819 Query 110302 TTGCACACAGAAGTCTCGTCTT-TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG-- 110358 |||||||| | ||| || || || |||| |||| | ||| || |||||| Sbjct 4818 TTGCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCT 4760 Query 110359 -GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 |||| | | ||||||||||| ||||||||| ||| ||| ||| ||||| || Sbjct 4759 GGAACGGATCGT---ACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTA 4703 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 ||||||| | || || || || |||| | | || || || ||| || | || Sbjct 4702 GAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA--CAGCTGC 4645 Query 110478 GGCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 | | | | ||| ||| || | ||||||| ||||||||| |||| | || Sbjct 4644 TGAGCGTTGA-TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTC 4586 Query 110535 AAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 ||| || | || | ||| || | ||||| || | || ||||||||| | || Sbjct 4585 AAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCC 4527 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | || ||| |||| || ||||||||||| || ||||| | ||||| ||| | || | Sbjct 4526 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 4467 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 ||| ||| || | |||| ||| ||||| || || |||| || || | | Sbjct 4466 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 4407 Query 110714 TATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCT 110770 || | |||||| || || | |||| ||||| || ||||| || || || ||| Sbjct 4406 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4347 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 ||| |||||||| || ||| | || || || | | ||| || ||||| || | || Sbjct 4346 GGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGG 4287 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 || || || || | || | ||| |||| || |||| ||| ||| ||||| | Sbjct 4286 AGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGA 4227 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAA 110950 |||| |||||||| ||| || || || | | || || | ||||| || |||| Sbjct 4226 TACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAA 4167 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || || ||| | || | ||| || |||||||||| ||||||||| ||||| || | Sbjct 4166 TAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGG 4107 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTG 111069 | |||||||| ||||| || || || |||| | || | || ||||| | ||| || Sbjct 4106 CGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTC 4048 Query 111070 TCGAGTGCGGA 111080 || |||||||| Sbjct 4047 TCCAGTGCGGA 4037 >seq2460 Length=21644 Score = 152 bits (168), Expect = 6e-32 Identities = 292/424 (69%), Gaps = 25/424 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | || |||||||| | ||||| Sbjct 3939 ATCTGCCGGTCGAATCGACCGGGACGAAGGATAGCCTTGTCTAGAATATCAGCTCGGTTC 3880 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| || |||| | || ||| || ||||| || || Sbjct 3879 GTACCAGCGAGCACCACAACACC---CTCACTCGAGTTGAAGCCATCCATCTCGACCAGC 3823 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 |||||||| | || | ||||||||||||||| ||| | || ||| || Sbjct 3822 AGCTGGTTCAGAGTATTCTCACGCTCATCGTTGCCACCCGAGAAGTTTCCTT-TGCTTCG 3764 Query 11666 A--ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 | |||| | ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 3763 AGCACGCGCC------ACAGCATCAATCTCATCGATGAACACGATGCACGGAGCATTGGC 3710 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 ||| |||| | ||| || ||||| ||||| || || ||||| |||||||| |||| Sbjct 3709 ACGAGCCTCCTTGAACAGGTCACGCACACGAGACGGACCCACACCGACGAACATTTCAAT 3650 Query 11784 GAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||| | | | | | || ||||| ||| || || | | ||||||||| |||| || Sbjct 3649 GAAATCCGAGCCGGAAATGCTGAA-GAACGGGACGCTGGCCTCACCAGCTGTGGCCTTAG 3591 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | | || |||||||||||||| |||| ||| | || || || || ||||||||||| Sbjct 3590 CCAACAGCGTCTTACCCGTACCGGGTGGGCCAACAAGCAGAGCACCCTTGGGGATCTTGG 3531 Query 11903 CACC 11906 |||| Sbjct 3530 CACC 3527 >seq1689 Length=29597 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| ||||||||||||||||||||| | ||| |||||| || | | || | | || Sbjct 23307 CCGATAGCGTCAATCTCATCGATGAAGATGATGCACGGTGCCTTC-CGCTTGGCCGACTC 23365 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || || ||||||||| ||||||| |||| | || | Sbjct 23366 GAAGAGGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCC 23425 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 |||| | | | ||| || || || |||||||||||| || |||||||| || ||||| Sbjct 23426 AGAAGAATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTT 23485 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||||||||| | |||| Sbjct 23486 ACCCGTACCAGGCGGGCCAG 23505 >seq4740 Length=106065 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| ||||||||| || ||||| || || |||||||| || | ||| Sbjct 16509 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 16450 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 |||||||||||||||| || ||| || || ||||||||||| |||||| |||||| Sbjct 16449 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 16390 Query 119634 GCGAATAGACGCTC--AGCAAAAGG-TCGAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | || ||||| | | ||| | | | |||| |||||||||| ||||||| Sbjct 16389 GCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGA 16330 Query 119691 GCCTT 119695 ||||| Sbjct 16329 GCCTT 16325 >seq6276 Length=26186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||| | | || || || ||||| | |||||| || || || | |||||| | || Sbjct 14907 CTTACCTCTCAACGGGAAGACACCATAGTAATCTCTGCCAACAACAGCGAGACCGCCCAC 14966 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT-- 168546 || | || || || ||||| ||||| || | ||| || || || | || || | Sbjct 14967 GGCAACCGTCTTGGCGGAATCTCCCTCCGTAAGGATCAGAGTGCAGT--CCTTGCTCTTC 15024 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 || |||||||| | ||| |||||||||| ||||||||||||||||| Sbjct 15025 GCGGTACCAGCGTGGTTGGCATCGTCCAGTTTGGGGATACCAGTGA 15070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588926003299800