Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4812 161 1e-34 seq4740 118 1e-21 seq2898 93.3 5e-14 seq1689 86.0 7e-12 >seq4812 Length=10756 Score = 161 bits (178), Expect = 1e-34 Identities = 672/1041 (65%), Gaps = 37/1041 (4%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 5012 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4953 Query 106338 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 | ||| |||| |||||| | || ||| ||||| ||| || || || | | | Sbjct 4952 CC-TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACC 4894 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 106455 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 4893 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 4841 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 4840 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 4781 Query 106516 AATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | ||| || |||||| |||| ||||| ||||| |||| || || ||| Sbjct 4780 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTT 4724 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 4723 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 4664 Query 106633 AATTGCCTTCCACACATCGGCGGCTG---GTACAATGGCGTTGGCCC--GTCCCTCCGCC 106687 || || ||||| || |||| || | || | | || | |||| ||| | Sbjct 4663 GATAGCGAACCACA-----GCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTC 4609 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 ||||||||| || || ||||||||||| || ||| | || ||| | ||||| || || Sbjct 4608 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGC 4550 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | || |||||||| | | ||| | ||| |||| || | ||||||||| || || Sbjct 4549 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 4490 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 || | |||||| | |||| | || | | | | || | || | ||| ||||| Sbjct 4489 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCT 4431 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | || |||||||| | | || |||||||| ||||| | |||| |||| | Sbjct 4430 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4371 Query 106926 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 | ||||| || || || | || | |||||||| || ||| ||||||| || || | Sbjct 4370 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4311 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCT 107041 ||| || ||||| || | || || || || || || || || | ||| |||| Sbjct 4310 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCG 4252 Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | | || || || || ||||| || ||||| || ||||| || || | | Sbjct 4251 CGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 4192 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || | || || || | || ||||| |||| | || | ||||| ||| Sbjct 4191 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAA 4132 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 |||| ||| || | ||| || || || |||||||| || || || ||||| |||| | | Sbjct 4131 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-A 4073 Query 107222 CCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 | | || ||||| ||||| ||||||| | || | ||||| | ||||||||| Sbjct 4072 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 4013 Query 107281 GATGGCCACACGCATAAACAT 107301 | || ||||||| || ||| Sbjct 4012 TAACGCTACACGCAGAATCAT 3992 >seq4740 Length=106065 Score = 118 bits (130), Expect = 1e-21 Identities = 381/577 (66%), Gaps = 16/577 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 16815 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 16756 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 16755 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 16696 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 16695 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 16636 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 16635 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 16577 Query 117225 GATAGT----TTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || | ||| | | || | | || || || ||| || Sbjct 16576 TACACGGCTCTCCGGCAGCTTGGTG-ACCA-GCTTGGAGTACAAAAGG--CA-GGCGAAG 16522 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || || || || || || ||||||| || || |||||| Sbjct 16521 TCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATG 16462 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | |||| | || | |||||| || || ||||||||||| || ||| Sbjct 16461 AGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCC 16402 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTT 117458 ||| || || || | |||||||| | | ||||| || || | ||| |||| || Sbjct 16401 ACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACTT 16343 Query 117459 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 117518 | |||||| | ||||||||| | ||| || | || | ||||| | | || Sbjct 16342 GAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATG 16283 Query 117519 CTTCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 117554 | ||| || |||| | ||||| ||||| ||||||| Sbjct 16282 GTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 16247 >seq2898 Length=40630 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 169326 AGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCA 169385 |||||||| || | || || || ||||| | || ||||| ||||| ||||| || Sbjct 15011 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 15070 Query 169386 TAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCC 169445 || || || ||||||||||||| || || || || ||||| | ||||||||||||||| Sbjct 15071 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 15130 Query 169446 TCCGTGACAAT 169456 ||||| | ||| Sbjct 15131 TCCGTCAAAAT 15141 >seq1689 Length=29597 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAAGA 9429 || ||||||||||| ||||||| || || ||| | || ||| || ||| | | |||| Sbjct 23313 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 23370 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 | || || || | |||||||||||| || ||||||| | || | || | ||| Sbjct 23371 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 23430 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 23431 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 23490 Query 9550 TACCTGGC 9557 |||| ||| Sbjct 23491 TACCAGGC 23498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589930718004840