Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3009 138 3e-27 seq4161 134 3e-26 seq2912 114 3e-20 seq1880 95.1 3e-14 seq4812 84.2 5e-11 >seq3009 Length=30629 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | ||||| | || || ||| Sbjct 11916 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCG 11975 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || || || ||||| ||| Sbjct 11976 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGA 12035 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||||| || |||||| ||||||| ||||| || || || | ||||| Sbjct 12036 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 12095 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | || || ||||| | ||||||| Sbjct 12096 CCCGTAAGGGTCTTGACGAAAATCTGCATTT 12126 >seq4161 Length=9822 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || || || | || || || Sbjct 9557 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCC 9616 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || |||||||| ||||| || Sbjct 9617 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 9676 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| || || | ||||||| ||||| || || || | |||||| Sbjct 9677 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 9736 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 9737 CCGGTCAAGGTCTTCACGAAGATCTGCAT 9765 >seq2912 Length=37157 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 4511 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4570 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || || || || ||||| || ||||| |||||||| || ||| Sbjct 4571 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4630 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| ||||||| ||||| || || || | ||||| || ||||| || || || || Sbjct 4631 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 4690 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 4691 ATCTGCAT 4698 >seq1880 Length=23057 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| || ||||||||||| ||||| ||||| || ||||| ||||| || || | | Sbjct 1 TGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAG 60 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 ||||| ||||| || ||||||| ||||| || ||||| || || ||||| | ||| Sbjct 61 TCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGC 120 Query 195139 AT 195140 || Sbjct 121 AT 122 >seq4812 Length=10756 Score = 84.2 bits (92), Expect = 5e-11 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 160610 GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAA 160669 ||||| ||||||||||||||| | | |||||| | ||||| | ||||||||||| ||| Sbjct 4490 GATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAA 4549 Query 160670 GCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAA 160729 || ||||| || | || | || ||||| || |||| ||||||| ||||| Sbjct 4550 GCTCCTGGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAG 4609 Query 160730 AAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCAC-ATCCTTGT 160788 || || ||| | || ||| | || || || | |||||| || | ||||| | Sbjct 4610 AAGGAAGGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGG-TTCGCTATCCTAGA 4668 Query 160789 CGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCT-GTCGCAAGA 160847 ||| || | ||| ||| ||||||| || |||||||| | || || |||||| Sbjct 4669 CGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACG-CAGCTAACCGCAAGT 4727 Query 160848 GTAACCAGAAGAACTTTGG 160866 || ||| ||||||| || Sbjct 4728 CGAATCAGCAGAACTTGGG 4746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109385064352697