Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4812 237 3e-57 seq4740 201 2e-46 >seq4812 Length=10756 Score = 237 bits (262), Expect = 3e-57 Identities = 714/1087 (66%), Gaps = 44/1087 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | | ||| | | | ||| | ||| || ||||| || Sbjct 5398 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 5339 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| ||||| ||||| || ||| |||||| |||||||| || || Sbjct 5338 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 5279 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGA--AGCTCTGCCCAGTC 213085 ||| || ||| | | ||||| | |||| | | | || | ||||||| Sbjct 5278 CAGCAGCGAGTTACGGAGACCGTGTTTA---ATGACGTCATCTTTTAGTGCGGCCCAGTT 5222 Query 213086 CCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||| ||||| |||| | ||| ||||||||| ||||| ||||| || Sbjct 5221 CCAAAGCCCAGATGAAGGTG--------TGACGCCCCACATGTCGAACTGGAAGATACCC 5170 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 || || | || ||||||| | | ||| || || ||| |||| | ||| Sbjct 5169 TTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATC 5110 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GC 213262 |||| || || |||||| ||||||| || || || || | | |||| | ||| | || Sbjct 5109 GACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAA-TTCACGAGC 5051 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 | ||| | ||| | ||||| | |||| |||| ||||| |||||||| || Sbjct 5050 TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4991 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || || ||||| | || | || ||| |||||| |||| ||| | | || ||| ||| Sbjct 4990 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 4932 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||| ||||||||||||||| ||| ||| ||| || | ||| || Sbjct 4931 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4872 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || | |||||| |||| | ||||||| |||||| || | |||| || Sbjct 4871 TGTAGTCGAACACA------CCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGT 4818 Query 213502 TGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||| || |||||||| | | | | | ||||||||||||| ||| ||| | ||||||| Sbjct 4817 TGCACACTGCCACCTCATCGGGTGAC-GTGTACTCCATGACTTCGCAGCATAAGTTGCTG 4759 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | ||||| || |||| |||||| || || ||||| ||| || | |||||||||||| Sbjct 4758 GAACGGATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGC 4699 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| |||| || ||||| | ||| | | || || | ||| || | | || Sbjct 4698 ATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCG 4639 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGA 213738 |||| | || || || | | | | | |||||||| ||| || || | | | Sbjct 4638 TTGA----TTGTCTTAC-GCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAA 4584 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGACACATGAGGCTCC 213795 | || | ||||||| | || ||| || ||| | | | |||||| | | |||| Sbjct 4583 ACTCATCGCCCCAGCACTCGTACAGACCAGGA---GCTTCGTTGGGACAGAACAAACTCC 4527 Query 213796 AGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 | | || | | ||||||| |||||| || || || |||||||||||| |||| Sbjct 4526 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 4467 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 ||| | || | | || || ||| || |||||||| || || || || | Sbjct 4466 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 4407 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCT 213972 ||| |||||||||||||||| |||||| || || | |||| | ||| ||||||| Sbjct 4406 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 4347 Query 213973 GGTCCAC 213979 ||||||| Sbjct 4346 GGTCCAC 4340 >seq4740 Length=106065 Score = 201 bits (222), Expect = 2e-46 Identities = 483/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || || ||| |||| ||||| | ||||||||| |||||| || || Sbjct 16704 AGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATC 16645 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| || | | | | |||||| | ||| ||| ||| || || | | Sbjct 16644 AGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATG 16585 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | || ||| ||| | | ||| || ||| ||||| || | | |||| Sbjct 16584 ATCTCGTGTACACGGCTCTCCGGCAGCTTGGTGACCAG---CTTGGAGTACAAAAGGCAG 16528 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| || ||||||||| |||| ||||||| ||||| Sbjct 16527 GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCG 16468 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||| || || | ||||||||| |||||||||||| Sbjct 16467 GGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 16408 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGAT 48312 || ||||| || ||||| || || | ||| | | || || | | | | | Sbjct 16407 CCTTCCACAGCAGCGAAAGCCAGCAGGCGCTC-CGGGTAGGAGGATACACGCGGGTCGCA 16349 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||||| ||||||||| ||| || || || ||||| ||||| || | Sbjct 16348 CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAG 16289 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | ||| |||||| | || || | ||||||| || ||| | Sbjct 16288 GAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAG---TGAGTAGAC 16232 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| || |||||| | ||||| ||| Sbjct 16231 CTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCAC 16172 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| || ||| || || ||||| || || || || || || || Sbjct 16171 CTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGC 16112 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || || | ||| || |||||||||| ||||| ||||| | Sbjct 16111 GAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTC 16052 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | ||||| | || || | ||||||||||| || ||||| || Sbjct 16051 CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTT 15992 Query 48670 GTACAT 48675 |||||| Sbjct 15991 GTACAT 15986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931453724509440