Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4812 140 4e-28 seq4740 118 1e-21 seq6276 82.4 9e-11 >seq4812 Length=10756 Score = 140 bits (154), Expect = 4e-28 Identities = 421/639 (66%), Gaps = 11/639 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | |||| || || | ||||||||| | ||||| | || | Sbjct 3983 CCGCAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCA 4042 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || ||||| Sbjct 4043 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTT 4101 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || ||| | || ||| |||| ||| ||||| | || | |||| || Sbjct 4102 CAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGA 4161 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || || || | || || | | | || || ||||| || ||||| || Sbjct 4162 CTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGG 4221 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 ||||| || || || || | | | |||| ||| | || || || || || | Sbjct 4222 CGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGA 4280 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || ||||| || ||| | || || ||||||| ||| || ||||||| Sbjct 4281 ACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATG 4340 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || |||| |||||||||| || ||||| | Sbjct 4341 TGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACG 4400 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| ||| | || | || | | | Sbjct 4401 CCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA-GCTGCACCGCGCC 4459 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || | |||| | |||||| | || || || ||||||||| | || |||| | Sbjct 4460 CGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAAT 4519 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 || | ||| | | |||||||| || | || || ||||| | ||| || | ||| || Sbjct 4520 GGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGA 4578 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 ||||||||||| || || |||||| || |||| || Sbjct 4579 TGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGG 4617 >seq4740 Length=106065 Score = 118 bits (130), Expect = 1e-21 Identities = 381/577 (66%), Gaps = 16/577 (3%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||||||| ||||| ||||| | |||| || ||| | || | | ||||| | || Sbjct 16247 ATTGACACGTACATCAAGGACGCGATC-GAGAAGGACCATCTCCTGCGTGCCATTGAGAC 16305 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTC 65065 | || ||| | ||||||||| | |||||| | || |||| ||| | || || Sbjct 16306 CATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATC 16365 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||| | | |||||||| | || || || |||||| || ||||||||||| || | Sbjct 16366 -CTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 16424 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | |||| | |||||||| || |||||||| || || ||||||| | Sbjct 16425 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 16484 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | || || || || || ||||| | ||| ||| || ||| || || || | Sbjct 16485 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCC-TG--CCTTTTGTACT 16541 Query 65246 CTTTGCGTAATAGACCCA-CTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGT 65300 | || | | ||| | || ||| | | | |||| ||| | || || || Sbjct 16542 CCAAGC-TGGT-CACCAAGCTGCCGGAGAGCCGTGTACACGAGATCATTCGTGACGCTGT 16599 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACT 65359 | ||||||| | | ||| | ||| | ||||| ||| | || || |||||||||| Sbjct 16600 GGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACT 16658 Query 65360 CTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG 65419 ||| |||| | |||||||||||| ||| | || ||||| ||| | |||| | Sbjct 16659 CTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTG 16718 Query 65420 TGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 || | || | |||| ||||| || ||||||| ||||| | || || | | Sbjct 16719 TGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAG 16778 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | ||||||||||| || |||||||| || || || || Sbjct 16779 GCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 16815 >seq6276 Length=26186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 169/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 14540 AACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 |||||||| |||| || ||| |||||| || ||||||||||| ||||||||||| Sbjct 13927 AACAACATCCACCTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAA 13868 Query 14600 GATGCTTCTCAG-ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTT 14658 || | | ||| | | || |||||||| || || || ||||| |||| Sbjct 13867 GACTCGGC-CAGTGCTCGTTATATTTTCACCAACCTAGAGCAGCTTACTCGCCGTATCTA 13809 Query 14659 TGATCCTCGGGATGACCCGAT--CCTCAACTACTTGGACGATGATGGACGCTCCATTGAA 14716 |||||| ||| | |||| || || || || | || || || | ||||| || Sbjct 13808 CGATCCTTTGGACAA--CGATTGTCTGAAGTATCTGAATGAAGACGGCCAGTCCATCGAG 13751 Query 14717 CCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGT 14776 || || | ||||| |||| | | || ||||| |||||||| || | || |||||||| Sbjct 13750 CCGGAATGGTACATCCCAATTATCCCCATGGTGCTCGTGAACGGCAGTGACGGTATCGGA 13691 Query 14777 ACGGGTT 14783 ||||||| Sbjct 13690 ACGGGTT 13684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596518958698080