Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq819 136 1e-26 seq246 107 6e-18 seq3280 89.7 2e-12 seq3177 84.2 6e-11 >seq819 Length=23676 Score = 136 bits (150), Expect = 1e-26 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| | | |||| | |||||| ||||| | |||||||| || || ||||| Sbjct 15216 ATCATAGCGAGTCATGACCGATTCCATTGCCTTGACAAGTCGACGCTGGATGTATCCAGT 15157 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 15156 CTCGGCCGTCTTCACAGCTGTATCAATCAGACCTTCACGACCACCCATAGCGTGGAAGAA 15097 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||||| ||| ||| | ||| | | ||| | || ||||||||||| ||||| Sbjct 15096 AAACTCTTGCGG-CGTCAAACCCTTCAGGTACGAGTTTTCCACGAAACCACGACTCTCGG 15038 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | ||| |||| | |||||||||| || | | | | ||||| ||||| | Sbjct 15037 GACCCAGGTCATCCTTGCCATAGTGTGGCAGTGTACGATGGTTGAAACCGTACGGGATTC 14978 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || |||||||||||||| |||| || | || ||||| || ||||| Sbjct 14977 GCTTACCTTCAACGTTCTGCTGACCCACACAAGCGATAATCTGGGAGATATT 14926 >seq246 Length=36056 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||| || ||| ||||| || || | || || || || | || |||| Sbjct 8901 GCGATGATACCGCAGATATCGCACACGTGCACACGATACGCGTCCGAGTTGGCAAATAGT 8842 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 ||| || || |||| | | ||||| || |||| |||||| ||||||||||| || Sbjct 8841 CGATCCATGAGGAAGTTGGCCGAGCCGTGGGAGATCAGACAATCGCGCTCCATTTCTCCC 8782 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 | || |||||||| || ||||| | ||| || |||||||| || | | || | Sbjct 8781 ATTCGCAGACCACCTTCACGAGCACGACCTTCCATGGGCTGACGCGTCAACATCGTCACA 8722 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || || || |||||| | ||||||||||| |||||||||||||| Sbjct 8721 GGACCACGAGAACGCGAGTGGATCTTATCGTCGACCATATGCTTCAGACGCTGGTAGAAC 8662 Query 251644 GCGGGACCGATGAAGAT 251660 | ||| || |||||||| Sbjct 8661 GTGGGTCCAATGAAGAT 8645 >seq3280 Length=26141 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 16511 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 16452 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 16451 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTG 16392 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 16391 ACCACCGGACAG 16380 >seq3177 Length=6963 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 5381 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 5439 Query 410554 T-GGGTAAtttttttAATTT 410572 | | |||||| ||| | ||| Sbjct 5440 TCGCGTAATTCTTTGATTTT 5459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471689537610567