Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4812 127 2e-24 seq4161 107 2e-18 seq2912 82.4 7e-11 >seq4812 Length=10756 Score = 127 bits (140), Expect = 2e-24 Identities = 356/539 (66%), Gaps = 33/539 (6%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || |||||||| |||| | || | || ||||| ||||| || ||||| ||| Sbjct 5415 TCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTAC 5356 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| ||||||| | || |||||||| ||||| ||||||||||||| || Sbjct 5355 ATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCT 5296 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT--TCCT 138661 ||||||||| || |||| || || || || | |||||| ||| ||| || | Sbjct 5295 GTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGA--CGTCATCTT 5238 Query 138662 TGAGCGACGACCAGTCCCACAAATC-GCT--AGGTTTTTTGTTCCACATATCGTACTGTA 138718 | || | | ||||| ||| | | | | |||| | | |||||| ||| |||| | Sbjct 5237 TTAGTGCGGCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGA 5178 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 | || ||| ||| || ||| ||| | | ||| ||||| ||| || || || | Sbjct 5177 AGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAA 5118 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| | || ||| | ||| || |||| || || ||| || || | ||| || Sbjct 5117 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCG--AAGATG-TTCTTGTTCA 5061 Query 138839 AT---CGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAACGCGTCGG 138889 || || || | | ||||||| ||| |||| ||| ||||||| || | Sbjct 5060 ATTCACGAGCTTGCGGGCTCTCGAACGCGTAGTTCATGAGGA------TGAACGCATCCG 5007 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG---- 138945 |||| || || ||||| | || | || |||||||||| || ||| ||||| Sbjct 5006 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGAC----TTGCGAGCC 4951 Query 138946 GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 || | | |||||||||||| || ||||||| ||||| | || ||| || |||||| Sbjct 4950 TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTT 4892 >seq4161 Length=9822 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || ||||| || || || | | Sbjct 9765 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 9706 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 9705 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 9646 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||||||||| | | || || || ||| Sbjct 9645 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 9586 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| |||| |||| || || Sbjct 9585 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGTGGCGG 9539 >seq2912 Length=37157 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | | Sbjct 4698 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 4639 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 4638 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 4579 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 4578 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 4544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449859409317480