Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4812 322 5e-83 seq4161 149 6e-31 seq3009 136 4e-27 seq2912 125 7e-24 seq4740 113 4e-20 seq1880 95.1 1e-14 seq4162 84.2 2e-11 >seq4812 Length=10756 Score = 322 bits (356), Expect = 5e-83 Identities = 1196/1843 (65%), Gaps = 50/1843 (3%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| ||||||||||| |||||||| ||| | ||| ||||| ||||| |||| Sbjct 5704 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGT 5645 Query 148013 CATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATGA 148071 || || ||||||| |||| | | || |||||||| |||||| || Sbjct 5644 CAGCTTACTGATAGTCGGGT-CGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATAT 5586 Query 148072 ACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTC 148130 | |||||||||||||| | || || | || || || | ||| |||||||| ||||| Sbjct 5585 AAGCGCCACGGTCAGCCGACAGGTCCA-GAACAGCCTTCTGCTTGATCTCCCACACCGTC 5527 Query 148131 TTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGC 148190 |||||| | ||| | || ||| |||||| | | || |||||||||||| | | Sbjct 5526 TTGTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCA 5467 Query 148191 GCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATC 148250 | ||||||||| || | ||| ||| | | | ||||||||| || || | ||| Sbjct 5466 TTCAGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5407 Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 ||||||| || || | | ||||| || || | ||| || || |||| |||| | Sbjct 5406 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5347 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || | || || | |||||||||||||||| ||||| || || | || || |||||| Sbjct 5346 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5287 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || |||||||||||||| || | |||| | || | | | || || || ||| Sbjct 5286 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCC 5227 Query 148431 CAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGG 148487 |||| ||| ||| | || ||||| ||| |||||||||| |||| | || || Sbjct 5226 CAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTA 5167 Query 148488 CTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-T 148546 || || || ||||| | ||| ||| || || ||| || | || || | Sbjct 5166 CTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGA 5108 Query 148547 CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA--GCAGCGCCGCC 148604 || ||| | || | |||| ||||||||| || | | |||| | || || || Sbjct 5107 CGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCA-CG-AGCT 5050 Query 148605 GACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCC 148663 | ||| ||| || || || || | | ||||| || || || ||||| ||||| Sbjct 5049 TGCGGGCTCTCGAAC-GCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4991 Query 148664 CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGATAGTGGT 148722 | |||||||| || || |||||||| ||| || |||| | | ||||| | || Sbjct 4990 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 4932 Query 148723 TGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTG-CGCA 148776 || |||||||| ||||| || |||||| | |||||| | || | | | | Sbjct 4931 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4872 Query 148777 GCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGAT 148836 | || || | || || || || | ||| || || || | ||| || | | Sbjct 4871 TGTAGTCGAA--CACAC-CGTTTTCCAC-AAACATAGG--CAGCGCCACAGACGCCAAGT 4818 Query 148837 TGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGC 148896 ||||||| ||| |||||| || | ||||||| | || ||| ||| | |||||| Sbjct 4817 TGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGG 4758 Query 148897 ATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCA 148956 | |||| |||| ||||| ||||| ||||| ||| ||||||||||| |||| Sbjct 4757 AACGGATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 4698 Query 148957 TGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCG 149013 || | || | || || || | ||| | || | || ||||| ||| | ||| | Sbjct 4697 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACC---ACAGCTGCTGAG 4641 Query 149014 CGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 || | | | | | || | || || |||| |||||| |||||| || ||| Sbjct 4640 CGTTGATTGTCTTACGCGCA-CGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAAC 4582 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | ||||| |||| |||| ||||| || | || || || | | |||| | Sbjct 4581 TCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 4522 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 || | || | ||| | |||||| || ||||| |||||||| |||||||| | | |||| Sbjct 4521 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 4462 Query 149193 C--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 | |||| ||||| || || ||| ||||| | || | ||| | || Sbjct 4461 CGGGCGCGGTGCAG--CTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGT 4404 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||||||||| | ||| | |||| || |||||||||||| |||||||||| Sbjct 4403 CGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGT 4344 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | || | ||| || ||| ||||||||| || | ||| || |||||| | | | || Sbjct 4343 CCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGC 4284 Query 149368 CGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427 |||| || || ||| ||| || || | ||||||| ||| ||||| | Sbjct 4283 CGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATAC 4224 Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 |||| | | || ||||| ||||| | || || ||| |||||||| || Sbjct 4223 CGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAG 4164 Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547 ||| || ||| | || || || || || ||| || ||| |||||||||| Sbjct 4163 AGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGT 4104 Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||| | || ||| ||||||| || || | ||||| ||| | |||||||| ||| | Sbjct 4103 TGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCA 4044 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 | || | ||||| |||||||||| || || |||| | ||| ||||||| Sbjct 4043 GTGCGGACTTGATGTCGCTCTTGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCG 3984 Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAGCCGTTTTCTAGTGTCTTGT 149724 | |||||| |||| ||| ||| | | | || ||||||| || || |||||| Sbjct 3983 GCCGCTCCACCACCTTG---CCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGA 3927 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||| ||||| | ||| || ||||||||| ||||| ||||| Sbjct 3926 AGCCGAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGC 3884 >seq4161 Length=9822 Score = 149 bits (164), Expect = 6e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | || |||| |||||| ||||||||||| Sbjct 9569 GTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 9628 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 9629 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG 9688 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||| | |||| || |||||||||| || Sbjct 9689 ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTC 9748 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 9749 TTCACGAAGATCTGCAT 9765 >seq3009 Length=30629 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || || ||| |||||||||||||||||| Sbjct 11927 GGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 11986 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| || |||||||| || || ||||| Sbjct 11987 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTT 12046 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||||||||||| |||| ||| ||||| || || || Sbjct 12047 GACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGT 12106 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 12107 CTTGACGAAAATCTGCAT 12124 >seq2912 Length=37157 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || ||||| || ||||| Sbjct 4543 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTT 4602 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 4603 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 4662 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| |||| || || || || ||||||||| Sbjct 4663 GGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCATG 4699 >seq4740 Length=106065 Score = 113 bits (124), Expect = 4e-20 Identities = 497/768 (65%), Gaps = 19/768 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| |||||||| || ||||| | | || || ||| ||| Sbjct 16816 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCAT 16757 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472 | || || ||||| | |||| || || | | || | | ||| |||||| | Sbjct 16756 CCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTA-GAGCAGAC 16698 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGC-GCGTTCATGCCCAGCAACGCC 120531 |||| || || ||||||||||||| ||||||| | || | |||||| || | || | || Sbjct 16697 GGTCAGCCACGAACTCAATGTACTGGCACATG-AGGGCAGAGTTCATACCAATCAGCTCC 16639 Query 120532 ACCGGCAACGCCG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || ||| | |||||| | |||||| |||| || || | || | Sbjct 16638 ACAGGGAGCGAGTCACGC-ACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTC 16580 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650 | | | | | | |||| |||| || || || | ||| | ||||| || || Sbjct 16579 GTGTACACGGCTCTCCGGCAGCTTG-GT--GACCAGCTTGGAGTACAAAAGGCAGGCGAA 16523 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||||||||||| ||||||||| || || |||||||| || |||| |||||||| Sbjct 16522 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 16463 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTC 120770 || ||| | |||| | | || |||| | || |||||| ||||| | ||| || Sbjct 16462 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 16403 Query 120771 CACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG-TCGATCCACT 120829 ||| || || || | || |||||| | | | | | || | ||| ||||| Sbjct 16402 CACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATA-CACGCGGGTCGCACCACT 16344 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCA 120889 | | ||||| | ||||| || || || || || ||| | || ||| || Sbjct 16343 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 16284 Query 120890 TGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGT 120949 ||| |||| | | ||| || | | |||||||| ||| | |||| || Sbjct 16283 GGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGT 16224 Query 120950 GCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGCA 121006 | | | ||| || || | |||| | || ||| | | ||||| || | ||| Sbjct 16223 GAATGTTCTCAATG-GCGAT--CTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCTGCA 16167 Query 121007 CCGCCC-GCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAG 121065 | | |||| | | | | ||| || |||||||||| ||| ||| |||||| Sbjct 16166 CTTCGTTGCTGAAGTTCATGGCCAAG-TTCTCGTTCACGATACCGTCACTGGCTGCGAAG 16108 Query 121066 AACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 || || |||||||||||||| ||||||||||||| ||||||||||||| Sbjct 16107 AAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTG 16060 >seq1880 Length=23057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 133539 TGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTG 133598 |||||||| || || |||||||||||||| ||||| ||||| | | || | || | Sbjct 1 TGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAG 60 Query 133599 TCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGC 133658 || | ||||||||||||| ||| | ||| |||||||||| || || ||||| |||||| Sbjct 61 TCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGC 120 Query 133659 AT 133660 || Sbjct 121 AT 122 >seq4162 Length=62052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||||||||||| | || | || ||| | ||||||||||| Sbjct 1 CCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCC 60 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || |||||||||| || || |||||||||||||| Sbjct 61 AGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379763616840