Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4812 96.9 8e-15 seq4161 91.5 3e-13 seq3009 84.2 5e-11 >seq4812 Length=10756 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||||| || ||| ||||| | | || | | Sbjct 4713 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC 4654 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | || | | ||| | |||||| || ||||| | ||||| Sbjct 4653 CACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 4594 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||| || || | || | |||| ||||| |||||||| || ||||| || Sbjct 4593 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 4534 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 | |||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 4533 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 4474 Query 173347 TAGAACAA 173354 || ||||| Sbjct 4473 TAAAACAA 4466 >seq4161 Length=9822 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 9741 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 9682 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 9681 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 9622 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || || |||||| ||||||| |||||||| || ||| Sbjct 9621 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACGCTCCAC 9562 Query 206374 CTTGT 206378 || || Sbjct 9561 CTGGT 9557 >seq3009 Length=30629 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || ||| || || || || || || ||||| | || ||||| Sbjct 12127 AAAATG---CAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 12071 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||| | || || ||||| || ||||| || || || ||||| ||| Sbjct 12070 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 12011 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| | || || || | ||| || | || Sbjct 12010 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 11951 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||| ||||| || || ||||| || Sbjct 11950 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 11916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181717970141511