Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq4916 131 2e-25 >seq4916 Length=47189 Score = 131 bits (144), Expect = 2e-25 Identities = 277/411 (67%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || || || ||||| ||||| ||||||| ||||||||| | || | Sbjct 40512 TCTACCAAGCGTCTACAAGCGAGTTATATGGTAAAGTACAAGCCACACCACAGGATGAGA 40571 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 ||||| ||| | ||||| || || ||||| || || || | | || ||||||| || Sbjct 40572 ACACACCATTCCATCCACGTTCACCCTATGGGGTGGCAAAGCAATTTGCCTATTGGAGTG 40631 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 || ||| | | || |||||| ||| ||||| || || |||||||||||||| | Sbjct 40632 TAGTTAACCATCGCGAAGCTTATGGTATGTACGCCGTTAACGGGATTCTATTCAACCACG 40691 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 || || ||||| || ||||| || || ||||| || ||| | | | |||| Sbjct 40692 AGAGTCCTCGACGCGGACCAACTTTTGTCACGCGTAAAATCACTCGAGCCGTGGTGCGTA 40751 Query 161553 TTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGG 161612 || | ||| | || || || | |||| || || || | || || |||| Sbjct 40752 TTCACGCTGGAATCGAGAGCTGCCTGTTTATAGGCAACCTCGACGCCCAGCGCGACTGGG 40811 Query 161613 GTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATG 161672 | || ||| |||||| ||||| ||||||| ||| |||| || || ||||| || | Sbjct 40812 GCCACGCTCGAGACTACGTGGAATGTATGTGGCGAATGCTACAGCACGACACTCCCGAGG 40871 Query 161673 ACTATGTGATTGCCACAGGTAAAGAGT-ATTCAGTGAAGGACTTTGTAGAG 161722 | | ||| ||||||| || | || || || ||| || ||||||||| Sbjct 40872 ATTTCGTGGTTGCCACTGG-AGAGTGTCATAGTGTGCGTGAGTTTGTAGAG 40921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729867638101080