Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4740 111 5e-19 seq4812 95.1 4e-14 >seq4740 Length=106065 Score = 111 bits (122), Expect = 5e-19 Identities = 309/455 (68%), Gaps = 23/455 (5%) Strand=Plus/Plus Query 443433 GCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCT---AC 443489 |||||||| ||| | || ||||||||||| ||||| ||| | | ||| || Sbjct 16103 GCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAAC 16162 Query 443490 GAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAAC 443549 ||| || ||| ||||||| || | |||||| | ||||| ||| || |||||| Sbjct 16163 GAAGTGCAGGTGC---CCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAAC 16219 Query 443550 ATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAAC 443607 |||||| | ||||||||| ||| | | ||| ||||| || || || || | ||| | Sbjct 16220 ATTCACTCGGAGGTCTAC--TCACT-GCTCATTGACACGTACATC--AAGGACG-CGATC 16273 Query 443608 -AGC-GGTCCATCTTCT-CAT--CGTTCATGACCACGCCAGGCATCACTGAAAAGACTCG 443662 || || |||||| || | | | || | ||||| || | |||| | ||| ||| Sbjct 16274 GAGAAGGACCATCTCCTGCGTGCCATTGA-GACCATCCCTTGTGTCACGAAGAAGGCTCA 16332 Query 443663 CTGGGCAAAACAGTGGCTCGAAC-GAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTT 443721 ||||||| ||||| ||| | | | ||| | || | ||||| || | |||| Sbjct 16333 CTGGGCACTCAAGTGGTGCGACCCGCGTGTATC-CTCCTACCCGGAGCGCCTGCTGGCTT 16391 Query 443722 TTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAA 443781 | |||| || ||||| | || || ||| |||| ||||||||| ||| | || Sbjct 16392 TCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT-CTTTCTGCTCCATCTTTTGGCTAAAG 16450 Query 443782 AAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGT 443841 ||||| || || |||| |||||||| ||| ||||| || |||||||| |||||||| Sbjct 16451 AAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGC 16510 Query 443842 TTGCATTGCGACTTCGCCTGTCTTCTCTACACCAA 443876 |||| ||||||||||| ||| | ||| |||| Sbjct 16511 ATGCACACGGACTTCGCCTGCCTTTTGTACTCCAA 16545 >seq4812 Length=10756 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| || ||| | |||||||| ||| || ||||||||| || || || || || Sbjct 4294 CGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGG 4353 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 || || ||| || ||||| | |||||| |||||||||||||||||||| Sbjct 4354 AGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGAC 4405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588197799380995