Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4812 163 4e-35 seq4740 113 6e-20 seq6276 89.7 6e-13 seq2898 89.7 6e-13 >seq4812 Length=10756 Score = 163 bits (180), Expect = 4e-35 Identities = 676/1047 (65%), Gaps = 31/1047 (3%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 5012 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4953 Query 111111 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| |||| |||||| | || ||| ||||| ||| || || || | | | Sbjct 4952 CC-TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACC 4894 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 111228 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 4893 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 4841 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 4840 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 4781 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | ||| ||||||||| |||| ||||| ||||| |||| || || ||| Sbjct 4780 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTT 4724 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 4723 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 4664 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCTCCGCCTCG 111463 ||||| || ||| | || | || | || | | || ||||| ||| |||| Sbjct 4663 GATAGCGAACC--ACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCG 4606 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT 111522 |||||| || || ||||||||||| || ||| | || ||| | ||||| || || | Sbjct 4605 TACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGCTTC 4547 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||| | ||| |||| || | ||||||||| || || || Sbjct 4546 GTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGG 4487 Query 111583 AATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | |||||| | |||| | || | | | | || | || | ||| ||||| | Sbjct 4486 CACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCTTAC 4428 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | || |||||||| | | || |||||||| ||||| | |||| |||| || | Sbjct 4427 GCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGC 4368 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || || || | || | |||||||| || ||| ||||||| || || | || Sbjct 4367 CCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACA 4308 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 111817 | || ||||| || | || || || || || || || || | ||| |||| | Sbjct 4307 TGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGG 4249 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || || || || ||||| || ||||| || ||||| || || | | | Sbjct 4248 ATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTT 4189 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | || || || | || ||||| |||| | || | ||||| ||| ||| Sbjct 4188 AGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGAC 4129 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||| || | ||| || || || |||||||| || || || ||||| |||| | || | Sbjct 4128 AACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTT 4070 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || ||||| ||||| ||||||| | || | ||||| | ||||||||| | Sbjct 4069 CTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCTAA 4010 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 || || |||| | ||| | ||| || Sbjct 4009 CGCTACACGCAGAATCATTTGCTGCGG 3983 >seq4740 Length=106065 Score = 113 bits (124), Expect = 6e-20 Identities = 380/577 (66%), Gaps = 16/577 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 16815 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 16756 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 16755 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 16696 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACA 122549 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 16695 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 16636 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 16635 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 16577 Query 122610 GATAGT----TTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || | ||| | | || | | || || || ||| || Sbjct 16576 TACACGGCTCTCCGGCAGCTTGGTG-ACCA-GCTTGGAGTACAAAAGG--CA-GGCGAAG 16522 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || || || || || || ||||||| ||||| |||||| Sbjct 16521 TCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATG 16462 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||| | |||| | || | |||||| || || ||||||||||| || ||| Sbjct 16461 AGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCC 16402 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTT 122843 ||| || || || | ||||| || | | ||||| || || | || |||| || Sbjct 16401 ACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACTT 16343 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 122903 | |||||| | ||||||||| | ||| || | || | ||||| | | || Sbjct 16342 GAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATG 16283 Query 122904 CTTCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 122939 | ||| || |||| | ||||| ||||| ||||||| Sbjct 16282 GTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 16247 >seq6276 Length=26186 Score = 89.7 bits (98), Expect = 6e-13 Identities = 237/357 (66%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| |||||||| || | || |||||||| ||||| || | | |||| ||||| Sbjct 13684 AACCCGTTCCGATACCGTCACTGCCGTTCACGAGCACCATGGGGATAATTGGGATGTACC 13743 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGG--ATCGGGTCATCCCG 181741 | || || || ||||| | || || || | || || || || |||| | ||| Sbjct 13744 ATTCCGGCTCGATGGACTGGCCGTCTTCATTCAGATACTTCAGACAATCG--TTGTCCAA 13801 Query 181742 AGGATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 |||||| |||| ||||| || || || ||||| ||||| | | | Sbjct 13802 AGGATCGTAGATACGGCGAGTAAGCTGCTCTAGGTTGGTGAAAATATAACGAGCACTGGC 13861 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 | ||||||||||||||| ||||||||||| || |||||| || || |||| || Sbjct 13862 CGAGTCTTTACCACCCATCAGACGCGTACCGAACTGACCAATCGGGGACAGTAGGTGGAT 13921 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || |||| | |||| || ||||| || ||| ||| | Sbjct 13922 GTTGTTGCTGCCAACGAAGTCCTGCGCCATATTCACGATACAGCCCTGCA---GACTTTG 13978 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTT 181975 |||||||| ||||| || || | || | || || | ||||||||||||||||| Sbjct 13979 CTCACCGTGATGGTAGGCAGAGTGCTCAGACACGTAGCCAGCCAACTGTGCCACCTT 14035 >seq2898 Length=40630 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 ||||||||| |||| || || || ||||| | |||||| || || ||||| ||||| Sbjct 15010 AAGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACC 15069 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| || || || |||||||| | || || || || || || | ||||| |||||||| Sbjct 15070 GTACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACC 15129 Query 182780 CTCCGTGACAAT 182791 |||||| | ||| Sbjct 15130 CTCCGTCAAAAT 15141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627978687933600