Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4812 242 5e-59 seq4740 165 1e-35 seq2898 95.1 1e-14 >seq4812 Length=10756 Score = 242 bits (268), Expect = 5e-59 Identities = 1087/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 5698 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 5639 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 117955 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 5638 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 5584 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || || |||| || || | ||| ||||| |||||| |||||||| ||| | Sbjct 5583 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 5525 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| | ||||| |||||| || || ||| || || || | || ||||| | || Sbjct 5524 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 5465 Query 118076 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 5464 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5407 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 5406 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5347 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 5346 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5287 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGAGCG 118310 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 5286 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 5230 Query 118311 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 5229 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 5175 Query 118363 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 118420 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 5174 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 5118 Query 118421 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | | | || ||| | ||| || || || || || || ||| |||| | Sbjct 5117 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 5058 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 5057 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 5000 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CGG 118596 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 4999 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 4941 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 4940 GATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 4881 Query 118657 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 4880 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 4828 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 ||||||| || ||||| | |||||| |||||||| || | ||| ||| Sbjct 4827 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 4768 Query 118776 AAGTTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| |||| || || |||||||||| ||||| ||||| |||| || Sbjct 4767 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCG 4711 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 4710 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 4652 Query 118893 ACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAGA 118950 || | || | | | || | | || | | || || | |||||||||| || | Sbjct 4651 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 4593 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | ||||||||||| || ||| | ||| | || || || || | | || ||||| | Sbjct 4592 GAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 4533 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 4532 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 4473 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 4472 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 4414 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 119186 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 4413 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 4354 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| ||||| | || ||| ||||||| ||||| | ||| || || || || Sbjct 4353 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 4294 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | || ||| || || || || || ||| |||| | || | ||| || Sbjct 4293 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 4234 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 4233 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 4174 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || |||||| ||| | || | ||||| || |||| ||||| | || Sbjct 4173 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGC 4114 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 || || |||||||||||||| || || ||||| |||| | || | || ||||| || Sbjct 4113 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 4055 Query 119486 GTAGGTCTCCA 119496 ||| ||||||| Sbjct 4054 GTACGTCTCCA 4044 >seq4740 Length=106065 Score = 165 bits (182), Expect = 1e-35 Identities = 394/583 (68%), Gaps = 22/583 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 16815 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 16756 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | || | || | ||| |||| | | ||| ||||| Sbjct 16755 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 16696 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | ||||||||||| || || | ||| Sbjct 16695 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 16636 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | ||| | | |||||| ||||||| || || | ||| |||| Sbjct 16635 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 16577 Query 129967 AAT---GGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-----GGCA 130018 | | |||||| ||| | | | | || |||| |||| | | ||| Sbjct 16576 TACACGGCTCTCCGG--CAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGCAGGCG 16525 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || ||| ||| | ||||||||||| |||||| || |||||||||| |||||| ||| Sbjct 16524 AAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGC 16465 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| || |||||||| | ||| || || | || || ||||| ||||||||||| || Sbjct 16464 ATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCT 16405 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCA 130197 |||||| ||||| || | || ||||| | ||||| | || | || |||| Sbjct 16404 TCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCA 16346 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||| | ||||| || ||||| ||| || ||| |||| ||||| || || | ||| Sbjct 16345 CTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAG 16286 Query 130258 TTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 | | ||| || ||| | || ||||||||| | || ||||| Sbjct 16285 ATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 16244 >seq2898 Length=40630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 15026 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 15085 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 180046 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15086 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 15137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618382702581960