Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq752 120 9e-22 seq3009 116 1e-20 >seq752 Length=14979 Score = 120 bits (132), Expect = 9e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 130719 TCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCT 130778 |||||||| |||| | ||| || |||||||| ||||| || ||||| || || || || Sbjct 713 TCATCATGACCAGCAAGCATCCCACCAAGCATGACAAAGTCTGCTCCAGCCCCGAACGCC 772 Query 130779 TTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCA 130838 || |||| || || ||| || | || || || |||| || || || || || | || Sbjct 773 TTAGCAACGTCACCAGGACATGTGCAGCCTCCGTCAGAGATCACGTGGCCGTTGAGACCG 832 Query 130839 TGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACT 130898 || || |||||||||||||| | |||||| | || ||||| || ||||||||| | Sbjct 833 TGAGCGGCATCAGCACACTCCAGCACAGCAGACAACTGCGGATAACCCACTCCAGTTTGT 892 Query 130899 TTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCC 130954 || | || || || |||| |||||||| || || | || | || || ||||| Sbjct 893 TTACGAGTGGTGCACACAGAGCCTGGACCGATGCCGACCTTGATGATGTCGGCTCC 948 >seq3009 Length=30629 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || || Sbjct 11897 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 11956 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 11957 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12016 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 12017 GATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 12076 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| || || || || || || |||||||||||| Sbjct 12077 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 12125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515122558188173