Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4812 241 1e-58 seq2898 118 1e-21 seq6276 111 2e-19 seq4916 95.1 1e-14 >seq4812 Length=10756 Score = 241 bits (266), Expect = 1e-58 Identities = 340/472 (72%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| || |||| ||| ||||||||||| || || || |||||| Sbjct 4046 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 4105 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| || ||||| |||| ||| |||||||||| Sbjct 4106 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGACTCT 4165 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| || || ||| | || ||| ||||| || ||| |||| ||| Sbjct 4166 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 4225 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGA---ACGGCACACCAATCAAGGGGACGAA 53478 ||||||||| ||| | ||| |||| || | || || || ||| || ||||| Sbjct 4226 ATCGGTATCAGTATGCAC-AACATCCGCGCCACTAACAGCT-AC--ATCCGCGGCACGAA 4281 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || || | || ||| | || || || ||| ||||||| || || || Sbjct 4282 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 4341 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 ||||||| || || ||||||||||| |||||||| |||||| | |||||||||||||| Sbjct 4342 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 4401 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | ||||| || || |||||| ||| || ||| | || | ||| ||| Sbjct 4402 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 4461 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || |||||| | || || ||||||||| | | |||||| Sbjct 4462 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAG 4513 Score = 167 bits (184), Expect = 3e-36 Identities = 534/814 (66%), Gaps = 37/814 (5%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||| |||||||||| || || || || || || ||| |||||| Sbjct 4901 ACGCGCAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG 4960 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || || || ||||| | || || || ||||| |||| || ||||| Sbjct 4961 TCCAACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATC 5020 Query 55253 ATGCTCGGATTGCCC-TTCGA---CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTT 55308 | | | | | | | ||||| | || || ||||| ||| | ||| || ||||||| Sbjct 5021 CTCAT-GAACTACGCGTTCGAGAGCCCGCAA---GCTCGTGAATTGAACAAGAACATCTT 5076 Query 55309 C-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGA 55367 | || || ||||||||||| || | ||| |||| | | || | | ||| Sbjct 5077 CGAGACG-ATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCACGGAATTGGGTC 5135 Query 55368 CCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGG 55427 | ||||||||||||| | || || || ||||| | |||||||||| | |||| Sbjct 5136 CTTACGAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGG 5195 Query 55428 GCAAGTCTGACCC-CATGT-----TTG--ACAAGT------TGAAGCATGACATTCACTT 55473 || ||| ||| ||| | ||| || | | || ||||| | || | Sbjct 5196 GC--GTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGT-CATTA 5252 Query 55474 GTGG-GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 || || || ||||| ||||| || || || ||||| || || || |||||||||| Sbjct 5253 AACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGA 5312 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||||| |||||| ||||||| ||| || || Sbjct 5313 TCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTGT 5372 Query 55593 TAGCAGGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCA 55649 | || |||||||| || |||| |||||| | || | ||||| || || || Sbjct 5373 TGGCTGGTGAGTT---CACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCG 5429 Query 55650 ACAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATC 55709 || |||| ||| | | | | ||| || | || || || || ||||| Sbjct 5430 GCATTTGGACGCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAAGG 5489 Query 55710 T---GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | ||| ||||| | | ||||||| ||| ||||||||||||||| |||| Sbjct 5490 TCAAGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 5549 Query 55767 AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGA 55826 || | | | ||| || ||||| ||||| || || ||| |||| ||||| ||| Sbjct 5550 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 5609 Query 55827 ACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGA 55886 ||||| ||| | | || | | ||| ||| || ||||||||||||| |||| Sbjct 5610 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 5669 Query 55887 AGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||||||||||||||| || |||||||| |||| Sbjct 5670 AGAAGGGACTCAAGACCGGCATGTACTACATGCG 5703 >seq2898 Length=40630 Score = 118 bits (130), Expect = 1e-21 Identities = 190/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| ||||| | || || || ||||| |||||| ||| || || ||||| || Sbjct 14086 CGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTG 14145 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || ||||| |||| |||||||| | ||| |||| || || Sbjct 14146 ACCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGAC 14205 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| || | ||||| ||||||||||| || || ||||| | ||| || Sbjct 14206 AATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAGGCTGTGTGCTCACTGCAGTAACC 14265 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| |||||||||| || |||| || || || | ||| ||| | | || Sbjct 14266 AGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAAC 14325 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || ||| | ||| || ||||| Sbjct 14326 CTTCCGCTGCGAGATTTTGAGACCATCGACCAC 14358 Score = 102 bits (112), Expect = 9e-17 Identities = 147/204 (72%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 14087 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 14146 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || || |||||| |||| ||||| |||| || |||| ||||||| Sbjct 14147 CCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGACA 14206 Query 117425 ATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGT 117479 ||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 14207 ATCGTCGAGTGTAACGAGGCT----TCTCCGTGGTGATAGGCTGTGTGCTCACTGCA-GT 14261 Query 117480 AGCCCGCCAGCTGAGCCACCTTCA 117503 | || ||||||||||||||||||| Sbjct 14262 AACCAGCCAGCTGAGCCACCTTCA 14285 >seq6276 Length=26186 Score = 111 bits (122), Expect = 2e-19 Identities = 244/362 (67%), Gaps = 8/362 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || ||||| || || | ||| || | ||| ||| ||| | Sbjct 13686 CCCGTTCCGATACCGTCACTGCCGTTCACGAGCACCATGGGGATAATTGGGATGTACCAT 13745 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCA---AAACGGAATTGTCAGCC 151992 |||||||| | || ||||| || ||| || |||| || || ||||| Sbjct 13746 TCCGGCTCGATGGACTGGCCGTCTTCATTCAGATACTTCAGACAATCG---TTGTCCAAA 13802 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCG-TGAAGATGTATCGGGAGCTGGC 152051 |||||| | || || ||||| | | ||| | | |||| || || || | ||||| Sbjct 13803 GGATCGTAGATACGGCGAGTAAGCTG-CTCTAGGTTGGTGAAAATATAACGAGCACTGGC 13861 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 || || || ||||| ||| ||||| || ||||| ||| || || |||| || Sbjct 13862 CGAGTCTTTACCACCCATCAGACGCGTACCGAACTGACCAATCGGGGACAGTAGGTGGAT 13921 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 ||||||| ||| ||||| | ||| |||| |||||| || |||||||||||| || Sbjct 13922 GTTGTTGCTGCCAACGAAGTCCTGCGCCATATTCACGATACAGCCCTGCAGACTTTGCTC 13981 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 |||||| || || || | ||||| | | ||| || |||||||| |||||||| | || Sbjct 13982 ACCGTGATGGTAGGCAGAGTGCTCAGACACGTAGCCAGCCAACTGTGCCACCTTGAGCTC 14041 Query 152232 CG 152233 || Sbjct 14042 CG 14043 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 117297 CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTAC 117356 ||||| |||||||| ||||||| || || | || || ||||| |||||||||| Sbjct 13831 CTAGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTAC 13890 Query 117357 CGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 |||| || ||| |||| || |||| | ||||||| ||| || |||| || |||| Sbjct 13891 CGAACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCA 13950 Query 117417 AGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || || || || || || || |||||| || || || || | ||||| | || Sbjct 13951 TATTCACGATACAGCCCTGCAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACA 14010 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||| |||| ||| |||||||| Sbjct 14011 CGTAGCCAGCCAACTGTGCCACCTT 14035 >seq4916 Length=47189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/369 (67%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | || || ||| || ||| ||| ||||||||| || Sbjct 40927 CGCGAGCTCTACAAACTCACGCACACTATGACACTCTCCAGTGGCAACCACGAAATCCTC 40868 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 |||| | ||||| | ||| ||||||| || |||||||| ||||| ||||| Sbjct 40867 GGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCCACGTAGTCTCGAGCGTGGCCCCA 40808 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG-TTCC------ 124653 |||||||| ||| || ||||| || | | | ||| || ||| | |||| Sbjct 40807 GTCGCGCTGGGCGTCGAGGTTGCCTA--TAAACAGGC--AGC--TCTCGATTCCAGCGTG 40754 Query 124654 ACTCCG--CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGA 124711 | | || ||| | | || || || ||||| ||||| | |||||||| | Sbjct 40753 AATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAGTTGGTCCGCGTCGAGGACT 40694 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| || || || |||| || || | ||||| | | || Sbjct 40693 CTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCATAAGCTTCGCGAT-GGTTAA 40635 Query 124772 CGTCA-TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 | || ||||||| |||| |||| | ||| |||||||| || || | |||||| | Sbjct 40634 CTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGTG 40575 Query 124831 TGTTTTCAT 124839 |||| |||| Sbjct 40574 TGTTCTCAT 40566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169548201800