Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4812 289 3e-73 seq3009 163 3e-35 seq4740 143 3e-29 seq2912 127 2e-24 seq2898 118 1e-21 seq4161 105 8e-18 >seq4812 Length=10756 Score = 289 bits (320), Expect = 3e-73 Identities = 1063/1645 (65%), Gaps = 46/1645 (3%) Strand=Plus/Minus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| ||||||||||| |||||||| ||||||||||| |||| | |||||| || | Sbjct 5703 CGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTC 5644 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 ||||| | || |||| | ||| |||||||| |||||| ||| ||||| || Sbjct 5643 AGCTTACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAA 5584 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | || | ||| || || ||||| || || Sbjct 5583 GCGCCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTG 5524 Query 80221 TACACCTTACGAAGCTCCTCTGGAATGTCCA-GA--TTTTGCACACTGCCACCGTCCTTT 80277 ||| || || || || ||||||||| || || ||||| |||||| || || Sbjct 5523 TACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTC 5464 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | ||| ||||| | ||| | |||||| | || |||| | || || |||| || Sbjct 5463 AGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGA 5404 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||||| || ||||| || || | ||||| |||| ||| | ||| Sbjct 5403 TACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTG 5344 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 |||||||| | | ||||||||| || ||||||||||||||| || |||||||| || Sbjct 5343 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 5284 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | |||| ||| || || || || ||||| || ||| || || | | | ||| Sbjct 5283 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAG 5224 Query 80518 AAATCAACCCCA----ACGCTGTGA--CCCCACATGTCGTGCTGCAAGATGCCCTCCGAC 80571 || |||| | | ||||| |||||||||||| ||| ||||| |||| Sbjct 5223 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 5164 Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTTGGCCAGCTC---ACAC 80625 |||||||| ||| |||||||||||| || ||| |||| |||| | ||| || Sbjct 5163 GCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCG---TGGCAATCTCCATCGAC 5107 Query 80626 GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCC 80685 | |||||| ||| || || || ||| |||| | |||||||| | || || Sbjct 5106 GTCTCCAT---GGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCT 5050 Query 80686 TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCG 80745 || ||| ||||||| || ||| | |||||| | || ||||| ||||| ||||| Sbjct 5049 TGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCA 4990 Query 80746 ATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 || | || || || |||||| |||| || | || ||||| | || || ||| |||| Sbjct 4989 ATACCAATGGGACGATGGCGCATGTTGGACTTGC-GAGCCTCTGCAACAGGATAATAGTT 4931 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 |||||||| ||| |||||||| || | ||| || |||| ||| ||| Sbjct 4930 GACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTT 4871 Query 80865 AAAGTCGAATTGGTTCCCCTT--CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 ||||||| || || |||||| || || || ||||||| |||||| Sbjct 4870 GTAGTCGAA--CACACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCAC 4813 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || |||||||| || | || |||| | || ||| ||| || || || Sbjct 4812 ACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGG 4753 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||||| ||| | ||| || |||||| ||| |||||||||||| |||| | Sbjct 4752 ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAG 4693 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 || || ||||| | ||| | | ||||| ||| ||| | || | || |||| Sbjct 4692 GGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT 4633 Query 81103 ACCTTGCG-GAATTTGCCTTCGGCCACATACTTGGCGTA---AGCTTCGTCGAACT--TG 81156 ||| || | | | ||||| | | ||||| | || |||| || |||| | Sbjct 4632 GTCTTACGCGCACGT-CCTTCCTTCTCGTACTTTTCATACAGAGCT---TCAAACTCATC 4577 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 || || | || || | || ||||| || || | || ||| | | Sbjct 4576 GCCCCAGCA--CTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCA 4519 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | | ||| || ||||||||| ||||| | ||| || ||| |||| ||||||| Sbjct 4518 TTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGG 4459 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| | ||||| ||| ||||| |||| || || || || | | ||| || Sbjct 4458 GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCG 4399 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACG 81393 ||||| ||||||| || | |||| ||| |||||||| || || ||||||| || Sbjct 4398 TGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACA 4339 Query 81394 TAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTC 81453 || || || || ||||||| ||||||||||| ||||| || || | || |||||| Sbjct 4338 TAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTC 4279 Query 81454 GTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCAC 81511 || || ||| | | | ||||||| | ||| || | |||||| || | Sbjct 4278 GTGCCGCGGAT--GTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGC 4221 Query 81512 CTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTAT 81571 | | ||| || || || || || | || | ||| || ||||| ||||| || | Sbjct 4220 CCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGT 4161 Query 81572 CTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGA 81631 | | | ||| | | | |||||| |||| |||||| | | | |||||| |||| Sbjct 4160 CATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGA 4101 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAA 81656 | || || ||||| ||||| |||| Sbjct 4100 AGAGAGTAGGGGTGGCGTGCGTGAA 4076 >seq3009 Length=30629 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| |||||||| || || || || || ||| | Sbjct 12125 AATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 12066 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||||| ||| | ||| ||||||||||||||||||||||| || || ||||| Sbjct 12065 GGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGACCA 12006 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 12005 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTACAA 11946 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || ||||| Sbjct 11945 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 11898 >seq4740 Length=106065 Score = 143 bits (158), Expect = 3e-29 Identities = 369/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 64297 TTCCCAATT-AGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTG 64355 ||||| ||| ||| || | || ||||| || | |||||||||||| || ||||| Sbjct 15956 TTCCCCATTCAGGAACAC-GAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 16014 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACA 64415 ||||| |||||| | || || | | || |||| |||||| || || | | ||| Sbjct 16015 GACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAGCTCA-CGGACA 16073 Query 64416 G-GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGT 64474 || | |||||||||||| || || || ||||||||| | |||||||| || ||| Sbjct 16074 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 16133 Query 64475 TTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCT 64534 ||||| |||| | | || || | || || || ||| | || ||||| || | |||| Sbjct 16134 ACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCT 16193 Query 64535 ATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACA 64594 ||| | ||| | || | ||||| ||| || || || | ||||||| Sbjct 16194 ATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACA 16253 Query 64595 AGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCG 64654 || | ||| | |||||||||| || | | || || ||||| | || Sbjct 16254 CGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTT 16313 Query 64655 CTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATC---GTGGGTCGTCGTTTG 64711 ||| || || |||||| | ||||| || |||| | | ||| || || | Sbjct 16314 GTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTACC 16373 Query 64712 GTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT 64771 |||| || ||||| || ||||||||| || ||||| || || || ||||| | Sbjct 16374 CGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCT 16433 Query 64772 CTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGA 64831 | || || |||||||| ||||| ||||| ||||| |||||| || ||||||||||| | Sbjct 16434 CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCA 16493 Query 64832 TCTCTCGGGACGAGGG 64847 || ||| |||||||| Sbjct 16494 TCAGTCGTGACGAGGG 16509 >seq2912 Length=37157 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| | || |||||||| || || || || || ||| | Sbjct 4701 ATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 4642 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||||||||| || || ||| Sbjct 4641 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGAC 4582 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 4581 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 4522 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 4521 AACATCCAGAAGG 4509 >seq2898 Length=40630 Score = 118 bits (130), Expect = 1e-21 Identities = 206/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | |||| || | ||| |||| || || ||||| || ||||| ||||| Sbjct 14382 GATAACCAGCGATCGCTGCCATCGGTGGTCGATGGTCTCAAAATCTCGCAGCGGAAGGTT 14323 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 | | ||| || | || || || ||||||| |||||||||| |||||| | || Sbjct 14322 CTGTTCGCTTGTTTAAAACGCAAGCTTACGAGTGAAGTGAAGGTGGCTCAGCTGGCTGGT 14263 Query 32074 TACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 ||| |||| |||| || |||||||||||||| || || ||| | || || |||| Sbjct 14262 TACT--GCAGTGAGCACACAGCCTATCACCACGGAGAAGCCTCGTTACACTCGACGATTG 14205 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 ||||| | || ||| |||| || || | ||||||||| |||| | || || || | Sbjct 14204 TCAACATGGCGCAGGACTTCGTGGGGTCCAATAACCTGCCGCTACTGTACCCGTCAGGTC 14145 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | ||||| || || || ||||| ||||| ||||| || | || || |||||||| Sbjct 14144 AATTTGGTACTCGACTGCAAGGTGGTAAGGACGCTGCTAGTCCTCGATATATCTTCAC 14087 >seq4161 Length=9822 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||||||||| || || || || || ||| | Sbjct 9765 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 9706 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || ||||||||||| || || || || |||||| Sbjct 9705 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 9646 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| || ||||| | || || || ||||| || Sbjct 9645 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 9586 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || || || ||||||| || || ||| Sbjct 9585 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGTGGCGGA 9538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261987775920