Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2489 158 1e-33 >seq2489 Length=74189 Score = 158 bits (174), Expect = 1e-33 Identities = 446/677 (66%), Gaps = 25/677 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || |||||||| | | |||||| ||||| ||||| || | |||| Sbjct 72190 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGG 72131 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29981 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 72130 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 72073 Query 29982 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 30041 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 72072 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 72013 Query 30042 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 |||| | || |||| | ||||| ||||| || | |||||| || || || |||| Sbjct 72012 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 71953 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 | | | || |||||||| || ||| | || || | ||| || || Sbjct 71952 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCG 71893 Query 30162 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 71892 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 71837 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 71836 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 71777 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 71776 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 71717 Query 30338 GCGTCCCAGATCTTTACCCCCTTCT----CAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||||||| || | | | |||| ||||| | | || ||||| || || Sbjct 71716 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAGTG----TGGGCACTTGTGTCTCCACT 71661 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||||| |||||||| | || | ||| || |||| |||||||| || | Sbjct 71660 AATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAA 71601 Query 30454 GGGAA----ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTC 30509 |||| | ||| || | || | | |||| ||| | ||||| || ||||| | Sbjct 71600 TGGAAAGACATTGTTCC-TCAGACTGAACCTCATCTGCGCTCCAAAGACCGACAACGTGC 71542 Query 30510 CCGTGCCCGTCCTGTCT 30526 |||| || || | |||| Sbjct 71541 CCGTTCCAGTACGGTCT 71525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406276771592772