Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2489 190 2e-43 >seq2489 Length=74189 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||||| ||||| |||| |||| || || | ||||||||| |||||| Sbjct 71595 TTTCCATTGCTGACGACCAAACGGGTGTTCTGGCGAGGTGTAGCCGAGGAGCTACTGTGG 71654 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA-----AGATCT 34334 || | || || | ||| | || | | ||| | | | | || | || | Sbjct 71655 TTTATTAGTGGAGACACAAGTGCCCA----CACTC-TGCAGCAGAAAGATATTCATATTT 71709 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||||| | || || || || | |||||| | || || | | |||||||| | Sbjct 71710 GGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAGGATCGGGAGGTTG 71769 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA 34454 | ||| | || ||||| ||||| ||||||||| | |||||||| || |||| || | Sbjct 71770 GAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGACA 71829 Query 34455 GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTG 34513 | || ||||| | || || || | ||||||||| |||| | ||||| ||| || Sbjct 71830 TGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAG-AGGTGATTCACAAGCTG 71888 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||| |||| || |||| ||| ||| |||||||||||| |||||| Sbjct 71889 CGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAAC 71948 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||| || || || ||||||| ||||||| |||||||| || || ||||| | Sbjct 71949 GAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTA 72008 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || ||||||| |||||||| | || ||||| ||||||||||| Sbjct 72009 TCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCC 72068 Query 34694 AGTTACGCTCTGCTCAC 34710 || ||||| ||||| || Sbjct 72069 AGCTACGCGCTGCTGAC 72085 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| || ||||||||||| ||||| || | |||||||| ||||||| Sbjct 72085 GTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGC 72026 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | ||| || || | ||||| || || |||||||| ||||||| ||||||| Sbjct 72025 TGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAA 71966 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || |||||| |||||| |||||||||||| ||| ||| |||| || | Sbjct 71965 GGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGG 71906 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 ||| ||| ||| || ||| ||||| | |||| ||||||||| | || || || Sbjct 71905 TCAGTAGGATTCGTACGCAGCTTGTGAATCACCT-CTGCTAGCTGGTCCACACCTTGGCC 71847 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| || | | || |||| || |||||||| | ||||||||| ||||| Sbjct 71846 AGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTA 71787 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || |||||||| | | || || | |||||| | || || Sbjct 71786 AACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCG 71727 Query 6994 AGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGACGAGAGCTCCTTGGTGTTC 7048 || || | ||||||| || | || | | | | ||| | | || | Sbjct 71726 CGATCCATTGCCGTCCCAAATATGAATATCTTTCTGCTGCA-GAGTG----TGGGCACTT 71672 Query 7049 GTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTC 7108 ||| | || || | |||||||| ||||||||| | || || |||| |||| ||||| Sbjct 71671 GTGTCTCCACTAATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTG 71612 Query 7109 GTCGTCAGCAGCGGAAA 7125 |||||||||| ||||| Sbjct 71611 GTCGTCAGCAATGGAAA 71595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224348125520